Tuber melanosporum: GSTUM_00009420001
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Entry
GSTUM_00009420001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
tml
Tuber melanosporum
Pathway
tml03022
Basal transcription factors
tml03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GSTUM_00009420001
09124 Replication and repair
03420 Nucleotide excision repair
GSTUM_00009420001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tml03021
]
GSTUM_00009420001
03400 DNA repair and recombination proteins [BR:
tml03400
]
GSTUM_00009420001
Transcription machinery [BR:
tml03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GSTUM_00009420001
DNA repair and recombination proteins [BR:
tml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GSTUM_00009420001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
9186954
NCBI-ProteinID:
XP_002840734
INRA:
GSTUM_00009420001
UniProt:
D5GK82
LinkDB
All DBs
AA seq
469 aa
AA seq
DB search
MADSDEDYIATDDEEIGAHNISKSGRHRGAGGAAATGGSGARSKNGSKPGGGAQKRERWE
DIKRSWDNVVEGEDGSLSSTVAGLLEAGKRKRLLKDTTPLQRGIIRHLILILDLSSAMME
KDFRPTRYLLSLRYACDFVREYFEQNPISQLGVLGMRDGLAVRISDLSGNPVDHIEAIGK
LRLDEGKGAPSLQNALEMSRAALFHAPSHGTREVVIVFGALLSSDPGDIHQTISHLVEDK
IRVSVVGLSAQVAVCRELCKRTNAGDEGVYGVALDDKHFRELLLDTTIPPVTRSAKMSAS
SLLMMGFPSRMVEKTASLCACHSTLTKGGYLCSRCSTKVCALPMECPACGLTLILSTHLA
RSYHHLFPLKNWVEVPWKAASKSTHCYACQIPFPHPPAKPEELSAPAKTATGTSVSSRYA
CTICHNHFCIDCDVFCHETLYNCPACQSSVPKGRISNGARGRSDPMEVG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcagattcagacgaagactacatcgctaccgacgacgaggagatcggagctcacaac
atcagcaagagtgggcgtcaccgaggagctgggggtgcggcagcaacaggaggaagcgga
gctcggtcaaagaatggcagcaaacccggcggtggcgcgcagaagcgagaacgatgggag
gacattaagaggtcttgggataatgttgttgaaggggaagacgggagtctgtcttctact
gttgcgggattgttggaagctgggaaacggaagaggctattgaaagatactactccgtta
caaaggggtatcatccgacacctgatccttatcctcgacctctcctctgcaatgatggag
aaggacttccggcctacgcgttatctactctcgctgcggtacgcttgcgactttgtccgg
gagtatttcgaacagaaccccatctcgcagctcggtgtcctgggaatgcgggatgggctt
gcggtacggattagtgatctgagtgggaatcctgtggaccatatcgaagctatagggaaa
ctccgtctggatgaagggaagggcgcgccgtcgctgcagaatgcgctggagatgtcgagg
gctgcgttatttcatgcgccgtcacacggtacgagggaggtggttattgtatttggtgcg
ctgttgagctcggaccccggggacatacatcagacgattagccatttggttgaggataag
attcgggttagtgttgtgggattgtcggctcaggtcgctgtgtgccgggagctgtgcaag
aggacgaacgctggggatgagggtgtctatggcgtcgctctagacgacaagcatttcaga
gagctactacttgatacaactattccccctgtcacacgctctgcgaagatgagtgcttca
agtctgctcatgatgggtttcccctcccgaatggtggaaaaaacagcttcattatgcgca
tgccactcgacactaacaaaaggcggttacctctgctcccgttgctccacaaaggtctgt
gcactaccaatggagtgtccagcctgcggtttaaccctcattctctccacccatcttgca
aggtcctaccaccacctcttcccgttgaaaaattgggtagaggttccctggaaagcagca
tcaaagtcaacccactgctacgcttgccaaatcccgttccctcaccccccggcgaaaccc
gaagaactctccgcgccggcaaagaccgctacgggaacatctgtctcgagtaggtacgct
tgcacgatatgccacaatcatttctgcatcgactgtgatgtgttttgtcacgagactttg
tataattgtcccgcctgtcagtccagtgtgcctaaagggaggatttctaatggcgccagg
gggagaagtgatcccatggaagtgggttga
DBGET
integrated database retrieval system
