Tuber melanosporum: GSTUM_00009675001
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Entry
GSTUM_00009675001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00009675001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00009675001
Enzymes [BR:
tml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
GSTUM_00009675001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTUM_00009675001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTUM_00009675001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
Motif
Other DBs
NCBI-GeneID:
9184744
NCBI-ProteinID:
XP_002840891
INRA:
GSTUM_00009675001
UniProt:
D5GKN9
LinkDB
All DBs
AA seq
680 aa
AA seq
DB search
MLNSQVHRGYMPQQPQNVKFLQQLAQPQGHQVDQAMNHVQNNAGNNTVGGHSHSYSSGGL
GNPSYASPQHNSNGVTTTLQNTSPHWQEQQTLIATSRNSSSPHHHARQAALSNKNSSQAQ
VTGGINPGAFQPLSAQHRKDGPPVEEKEVRKHDTGELERQDWKSLDLGGQGLRALSKSLF
QYTFLDKLYINHNKLTVLPPAISRLKLLQLLDASGNQLTEVPPELGMLTNLKNLYLFDNQ
LTTLPNEIGSLYHLEVLGVEGNPLQSDLKEVMIKDGSRGVILSLRESMQVSFSPVERDWI
ILDDSSRSGAKSEADKFQVLCYNILCDKYATQNMYGYSPSWALSWDYRKKLIHDQLIESK
ADIICLQEVDMENFNEYFMPGLAREEYKGAFYPKSRAKTMNETEKKSVDGCATFFKSTKF
SLLEKQIVDFSSAALNREDMKKTADIYNRVMPKDNIAVITFLENKITGSRLIVANVHIYW
DPQYRDVKLVQVGILMEDITKYADQWAKSFPNRARSPGDTSPLEPAVNYSSGSQIPLIIC
GDFNSIADSGVYELLSRGSVANDHDDLLGRTYGNFTRDGMSHPFPLKSGYSNIGELDFTN
YTPGFTGVIDYIWYTTSNLNVTGLMGNVDKEYLARVPGFPNMHFPSDHILLQTEFQVKPR
KEPIVKPPPPDFGNNPPRKS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgcttaattcccaagtccaccgagggtacatgcctcaacagccgcaaaatgttaagttc
ttacaacagttagcgcaacctcaggggcaccaagttgaccaagccatgaatcatgtgcaa
aacaatgccggaaacaacacagttggaggccattcacattcttactcttccggcggattg
gggaatccctcctacgcttcaccccagcacaactctaatggcgtaacaacaacattgcag
aatacctctccacattggcaggaacagcaaacccttatcgctacatctcgtaactctagc
tctcctcatcaccacgctcggcaagctgcactatcaaacaaaaactcatcccaagctcaa
gttactgggggtatcaatccaggcgcatttcaacctctgagtgctcaacaccgcaaggat
ggcccccccgtggaagagaaggaagtgcggaagcatgatacaggcgaactggagaggcag
gattggaagtctttggatctaggtggtcaagggctccgggccttatctaaatcattattt
cagtacacctttctagacaagctatacataaaccataataagcttaccgtgctccctcca
gctataagtcgactgaagctcttacagcttctcgatgcctcggggaatcaacttactgag
gtaccacctgagttgggcatgttgacgaatttgaaaaacctttacctgttcgacaatcag
cttactactctcccgaatgaaattggatctctgtaccacctagaggttctcggagtagag
gggaatcccctccagtccgacttgaaagaggtcatgatcaaagacggttcgagaggagtt
atcctgagtttaagagaatcgatgcaagtttcattttcccccgtcgagagagactggata
atactcgatgattcttccagaagtggtgccaaatccgaagcggataaattccaggttttg
tgctacaacattctttgtgacaaatacgcgactcaaaatatgtacgggtattcgccttct
tgggcactttcatgggattaccggaagaagttgattcatgatcagttgattgaatcgaag
gcggatattatctgcttgcaggaagttgatatggaaaatttcaatgagtattttatgcct
gggcttgctagggaagaatataaaggtgctttttatccaaagagccgagcaaagaccatg
aacgaaacggaaaagaagtctgtagatgggtgtgcaacgtttttcaagtctaccaagttc
tctctgctcgaaaaacagattgttgatttcagctctgctgctttgaaccgcgaggatatg
aaaaagactgcagatatctacaaccgtgtcatgccaaaggacaatattgctgttataact
ttcctggagaataaaatcacaggctcacggctcattgttgccaacgttcatatctactgg
gaccctcaataccgagatgttaagcttgttcaagtaggaattctaatggaagatatcact
aaatacgcggatcagtgggcgaagagctttccgaacagggcgcggtctccaggtgatacg
agccctctggaaccagctgtcaactattcaagcggttctcaaattccgttgattatttgt
ggggacttcaattcaatcgcggatagtggggtgtacgaattgttatcccgtggttcagtt
gcgaacgaccacgacgacctgcttgggagaacctatggtaactttactagagacgggatg
tcgcatccatttcctctaaagagcggttattcaaatattggagagctcgattttaccaac
tacactcctgggtttacgggtgttatcgactatatttggtacaccacaagcaatctcaat
gttacaggattaatgggaaatgttgataaagaatacctggcgcgagtgcctgggtttcct
aacatgcacttccccagcgatcatattctgctacagaccgaatttcaggttaagcctcgg
aaggagccgattgttaagccaccaccccccgatttcggcaacaacccaccgcgaaagtca
tga
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integrated database retrieval system
