KEGG   Tuber melanosporum: GSTUM_00010140001
Entry
GSTUM_00010140001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
tml  Tuber melanosporum
Pathway
tml03040  Spliceosome
tml04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSTUM_00010140001
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    GSTUM_00010140001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tml03041]
    GSTUM_00010140001
   04121 Ubiquitin system [BR:tml04121]
    GSTUM_00010140001
   03400 DNA repair and recombination proteins [BR:tml03400]
    GSTUM_00010140001
Enzymes [BR:tml01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     GSTUM_00010140001
Spliceosome [BR:tml03041]
 Complex B
  Other components
   Prp19 complex
    GSTUM_00010140001
 Complex C
   Prp19-CDC5 complex
    GSTUM_00010140001
Ubiquitin system [BR:tml04121]
 Ubiquitin ligases (E3)
  U-box type E3
   GSTUM_00010140001
DNA repair and recombination proteins [BR:tml03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    GSTUM_00010140001
SSDB
Motif
Pfam: WD40_Prp19 Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40 WD40_WDHD1_1st Beta-prop_WDR19_1st Beta-prop_TEP1_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_CAF1B_HIR1 PEP5_VPS11_N Beta-prop_WDR11_2nd ATG16 DUF5372
Other DBs
NCBI-GeneID: 9186071
NCBI-ProteinID: XP_002841136
INRA: GSTUM_00010140001
UniProt: D5GLD4
LinkDB
AA seq 534 aa
MIAKLTSQNNHAKSSAIAKTSSLYEAEKINKPLVHTHKHESSSHPLESNTAQNIMFCAIS
GEAPTVPVVSSKSGSLFEKRLIEAYIDEHGTDPVSGEDLNTADLIEVKSSKIVRPRPPTL
TSIPALLTSFQDEWDSIMLETHKLRSQLVQTRQELSTALYQNDAATRVIARVTKERDEAR
EALAQLSVVTGSRSSRGPDEMEVDKDGLPSYVRDRIDETMKQLSASRRKRAIPQGWTDAE
SVSTFQTLRTLETPFSGASSLDLDATGELTLVGGANGSSGIYSLAQEDLATILNASDGAI
VDVAWAGRNAITASAGGVLRVWDQQGSDSTTIKAHSGGLKALATHPRDDLLASVGEDKSW
VVYDLEASKPVIQAYGEDEISTADFHPDGHLFATGTGSSALIYDIRTTVIGADFKLGGTV
SSMSFSENGFWLAIALKGKTDVQIWDLRKITQTKALDIGSRVDTVKWDYTGQYLATGGQA
GISVQAYSKSTKSWSEPLRTAVSAVSTAWGNNAASLVAVDSQGVLTWLGIGEES
NT seq 1605 nt   +upstreamnt  +downstreamnt
atgatcgcaaagttgacaagtcaaaataatcatgccaagtcctcagccatcgccaagaca
tcatcactatatgaggctgagaaaatcaacaaaccccttgttcacacacacaaacacgag
agctcaagtcaccctctcgagtcgaacaccgcacagaacataatgttttgcgcaatttcc
ggtgaagcgccaactgttcccgtcgtctcttcgaaatctggcagcctctttgaaaagcgc
ttgatcgaggcttacattgacgagcatggcaccgatcctgtcagtggcgaagacttgaat
actgctgatctgattgaagttaaatcctcaaagattgtccgtccgagacctcctacactt
acctctatacccgcgctccttacttcttttcaagacgaatgggactccatcatgcttgag
actcacaagctccgcagccagctcgtccaaactaggcaagagctttcaacggcactttac
cagaacgatgcggcgaccagagttatcgcgagagttaccaaagagcgagatgaagcaaga
gaggcactcgcacaattgtctgttgttactgggtcgagatcgagtcgtggccctgacgaa
atggaggttgataaagatggtcttccgagttacgttagggatagaattgatgagaccatg
aaacaattgtctgcttcgaggaggaaacgtgctatcccacaaggttggaccgatgcagaa
agtgtttcgactttccagaccctccgtacactggaaacaccattttctggcgccagctcc
cttgatctcgatgctactggcgaactcacacttgttggtggagctaatgggtcttccgga
atttactcgcttgctcaggaggatttggcaactattcttaatgcctccgacggcgctatc
gttgatgttgcctgggccgggagaaatgcaattacggcgagtgcgggcggtgtactcagg
gtgtgggatcaacagggaagtgatagtactaccattaaagcccattctggcggactgaag
gctttggctactcacccgagggacgaccttctggcttctgttggcgaagataagagctgg
gttgtctacgatctggaggcatcgaaacctgttattcaggcttacggggaagatgaaatt
tccaccgccgatttccatcctgatgggcacctgttcgcgactgggactggaagttccgct
cttatttatgacattcgcaccactgttatcggtgcagatttcaagcttggcggtactgtt
tcctctatgagcttctctgaaaacgggttctggttggcgattgctttgaagggcaagacc
gatgttcagatctgggatttgagaaagataacacaaaccaaggccctggatatcggtagc
agggtggacacagtcaaatgggattacactggccagtaccttgcaactggtgggcaagcc
ggaatcagtgtacaggcctattcgaaatctaccaaatcttggtccgaacctcttagaact
gctgtctcagctgtttccaccgcttggggtaataacgcggctagtttggtagctgtcgat
tcgcaaggagttttgacttggttagggatcggagaggaatcgtaa

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