KEGG   Tuber melanosporum: GSTUM_00010482001
Entry
GSTUM_00010482001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tml  Tuber melanosporum
Pathway
tml03008  Ribosome biogenesis in eukaryotes
tml03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    GSTUM_00010482001
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSTUM_00010482001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tml03021]
    GSTUM_00010482001
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00010482001
   03009 Ribosome biogenesis [BR:tml03009]
    GSTUM_00010482001
   03016 Transfer RNA biogenesis [BR:tml03016]
    GSTUM_00010482001
Transcription machinery [BR:tml03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     GSTUM_00010482001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     GSTUM_00010482001
Ribosome biogenesis [BR:tml03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    GSTUM_00010482001
Transfer RNA biogenesis [BR:tml03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    GSTUM_00010482001
SSDB
Motif
Pfam: XRN_M XRN_N CRA
Other DBs
NCBI-GeneID: 9187338
NCBI-ProteinID: XP_002841367
INRA: GSTUM_00010482001
UniProt: D5GM15
LinkDB
AA seq 883 aa
MGVPALFRWLTNKYPKIVSPVIEEQPQEIDGVVRAVDTTQPNPNGESDNLYLDMNGIVHP
CSHPEEGEPPATEEAMMLAVFAYTERVVNMVRPNKLLMIAVDGVAPRAKMNQQRSRRFRS
AQEAKEKEDETAQLIEQMEKHGSKFDDVIKNKKIWDSNAITPGTPFMDILAASLKYWIAK
KLNDDPAWAKLKIIISDSTVPGEGEHKIMEFIRSQRLSPEYDPNTRHVIYGLDADLIMLG
LGTHEPHFKVLREDVFAKEARAKTCRIYNASPLKPFFELERALDDWIFMCFFVGNDFLPH
LPSLEIRENGIDTLIAVWKDNIPLMGGYVTKDGTVDLKRVQYILDGLAKQEDQIFRNRKR
TISTTAPAISHKRKADMVWGDETPKTPGSESEADDPDRDPVRLWEPGYRERYYEQKFHVS
PDNVEFRNKVAASYVEGLCWVLLYYFQGCPSWTWYYPYHYAPFAQDFNDVGKLDIQFKKG
KPFKPFEQLMGVLPAASKHALPEPFQKLMTEEDSEIIDFYPESFPIDLNGKKFAWQGVAL
LPFIDEKRLLDAVSKVYPTLTPEDDARNAMGHDLLFCSVENDMYDDVAIRFYYKGRSDDE
YDLDPTKSQGLSGKVIKDPAFIPQGTIPFPLSLEDMPKIEGDKSLCVFYEFPKTKNAHKS
MLLRGVKLSPPVLSHTDLEMIKNNAQNSGRSYGGAPLYRSNSGRGRGRGSGGEFQGSYQS
NRGPTQSYQGQNHTPSYGNGTWQPPPPPPALAGWGGWGGQHNQVRGNYTNLQPPYIAPGQ
YHQGGRYPPPPAPPRFSHASNFGRGQPQGSYNGGGYNYNQPSRDDRYRPGGGGGGGGENR
YNDHYNDRRDDRGRGGGGGGYRGGRGGGGTNRARSDNTELWRR
NT seq 2652 nt   +upstreamnt  +downstreamnt
atgggtgttccggccctgttcaggtggcttacaaacaagtatcctaaaattgttagccct
gtgatcgaggagcaacctcaagagatcgacggagttgttagagcagtagacacaacccag
ccgaatccgaatggcgagtcggacaatctttaccttgacatgaatggtattgttcatcca
tgttctcatcccgaggagggtgagccaccagcaacggaagaggcgatgatgctagctgta
ttcgcctacactgagcgtgtcgtaaacatggtgaggcctaacaagcttctcatgattgct
gttgatggtgttgcgcctcgtgcgaaaatgaatcagcaacgctctcgtcgcttcagatcg
gcacaggaagctaaggaaaaagaggatgagaccgcccaattaattgagcagatggagaag
cacgggagcaaatttgacgatgttatcaagaacaaaaagatttgggacagtaatgccatt
acccctggtactccttttatggatattcttgcagcatcgctcaagtactggatcgcaaaa
aaactcaacgatgaccctgcttgggctaaattaaaaatcatcatctctgattccaccgtt
cccggagagggggaacacaagatcatggaattcatcagatctcagcgcctctccccggaa
tatgacccaaatactcgtcacgtcatatatggccttgacgccgatttgatcatgttgggg
cttgggactcatgaaccccattttaaagtcctccgtgaggacgtctttgcaaaggaagct
agggcaaagacatgcaggatatacaatgcttccccgctgaagccttttttcgagttggag
agagctcttgacgattggatttttatgtgctttttcgtcggaaacgactttttaccccat
ttgccaagtttggaaatcagagagaacggaatcgacactttgattgccgtttggaaagac
aatatccctcttatgggaggttacgttaccaaagatggaactgtagatctaaaaagggtt
cagtacatccttgatgggttggcaaagcaggaagatcaaatcttcaggaatcggaagaga
acaatttccacgaccgcccctgccatatcccacaagagaaaggctgatatggtttgggga
gacgaaactcccaagacccccggttccgagtctgaggccgatgaccctgatcgcgatcct
gttcgtctctgggagcccggataccgtgagcgatattatgagcaaaagtttcatgtctcc
ccggacaatgttgagttcagaaataaagtcgctgctagctatgttgaagggctttgttgg
gtgctgctctattacttccaaggatgccctagttggacttggtattacccataccactat
gcaccgtttgcccaagatttcaatgacgtaggcaagcttgatatccaatttaagaaaggg
aagcctttcaaaccgtttgaacaactgatgggtgtgctgcctgccgcgagtaaacacgct
cttcccgagccgtttcagaaacttatgacagaggaagactctgagatcattgacttttac
cccgaatcgttccccattgacttgaatggaaagaagttcgcctggcagggtgtagcactg
ttgccattcatcgatgaaaagcgtttgttagatgctgtgtcaaaggtctatcccacgcta
actcctgaggacgatgcgaggaatgcaatgggacatgatcttctattctgttcagtagaa
aacgacatgtacgacgatgttgccatacgattctactataagggccggagtgacgacgaa
tacgaccttgaccctacgaagagccaaggactgtctggaaaggttatcaaagatcctgct
ttcatccctcagggcacgataccttttccactatccttagaagatatgcctaaaatcgag
ggcgacaaatcactttgcgtcttttacgaatttcccaaaaccaagaatgcgcacaaatcg
atgttacttcgtggggtcaagctcagtcctcccgtcctctctcatacagacctagaaatg
atcaaaaacaatgctcagaactcaggccgctcgtacggtggcgctccgctttatcgtagc
aacagcgggagaggccgtggccgcggtagtgggggagagttccaaggctcctatcaatcc
aatcgaggtcctactcaaagttaccagggacaaaaccacacaccttcttatggaaatggg
acttggcaacctcctccacctccgccagctctcgcaggttggggcggatggggcgggcag
cacaaccaggttcggggaaattacacaaatctgcaaccaccatatatagcaccaggacaa
taccaccagggcggtcgatacccccctccacccgctcctcctagattctctcatgcttct
aactttggacgcgggcagcctcaaggctcatacaatggaggcggttacaactacaatcag
ccatctagggatgatagataccgtcctggtggtggtggcggtggcggtggtgagaatagg
tacaatgaccattacaacgatcgtcgcgatgaccgcggtagaggtggtggtggaggaggt
taccgaggcggtcgtgggggtggaggtaccaatagggccagaagtgacaatactgaactc
tggagaagatga

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