Tuber melanosporum: GSTUM_00010488001
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Entry
GSTUM_00010488001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00010488001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00010488001
03041 Spliceosome [BR:
tml03041
]
GSTUM_00010488001
03009 Ribosome biogenesis [BR:
tml03009
]
GSTUM_00010488001
03016 Transfer RNA biogenesis [BR:
tml03016
]
GSTUM_00010488001
Enzymes [BR:
tml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSTUM_00010488001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
GSTUM_00010488001
Spliceosome [BR:
tml03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
GSTUM_00010488001
Complex C
U4/U6.U5 tri-SnRNP related factors
GSTUM_00010488001
Ribosome biogenesis [BR:
tml03009
]
Eukaryotic type
Pre-60S particles
Helicases
GSTUM_00010488001
Transfer RNA biogenesis [BR:
tml03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
GSTUM_00010488001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DSHCT
DEXQc_Suv3
Helicase_C
Motif
Other DBs
NCBI-GeneID:
9187344
NCBI-ProteinID:
XP_002841373
INRA:
GSTUM_00010488001
UniProt:
D5GM21
LinkDB
All DBs
AA seq
1289 aa
AA seq
DB search
MYGEELFDVFEPGSLKNDARPSKSKKDRSERKKRLANGGGRPQESDGDSIVAESRTDAMS
LDSAPVVGGGGGTITSPGNLPLAKRQRRESGADPIAADVFEIDAAREVPASSGLTSQDTE
GKSIIIPHQVRHQVSLPTDYQYKPIENHIFVEPPARAYGFTLDPFQKTSVAAIERGESVL
VSAHTSAGKTVVAEYAIAQSLRDNQRVIYTSPIKALSNQKYREFSAEFGDVGLMTGDTTI
NPNATCLVMTTEILRSMLYRGSEVMREVQWVVFDEIHYMRDKARGVVWEETIILLPDKVR
YVFLSATIPNAMQFAEWICKTHNQPCHVVYTDFRPTPLQTYLFPAGADGDNPGDINGRKG
RGRSGPSDIYKIVKMIMIKNYNPVIVFCFSKRECESLALQMSSLAFNDDAEKEMVGKVFG
NAISSLSEEDRGLSQIQHVLPLLRRGIGIHHSGLLPILKEVIEILFQEGLIKVLFATETF
SIGLNMPAKTVVFTNVRKFDGKEQRWVSPSEFVQMSGRAGRRGLDDRGIVILMLDQTLEP
AIAREIVKGEQDRLNSAFYLGYNMILNLMRVEGISPEYMLEKCFFQFQNHAGAAGLEKEL
SELETEKINTVIEDEPTVREYHDLRQKLDGYTKEMREVINHPNYCLQFMQPGRLVKVKYL
NYDFGWGAVVNYTKRLRSRSGEEFSPQESYIVDVLLNIASDTSSFTRPGQELPTGVRPPS
EGDNGKMEVVPILLSCLASISGLRIFLPKDMKSQEQRNSARKNLDEVKRRFADGISVLDP
IENMGIIDDSFKNLLRKIEVLESRLLSNPLHNSPRLKVLYNLYNHKVELQEKIKAVRKRI
NLAHSVMQLEELKYRKRLLRRLGFIDELDTIQLKARVACEISSGDELLISELLFNRVFNE
LSPEQTAALLSCFYHEFWPRLMVRCSKPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXKIITSSNSDYPM
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgtacggtgaggagctgtttgatgtctttgagcctgggagcctcaaaaacgatgcccgc
ccatccaaatcgaagaaagatcgctccgaacggaaaaagagactcgcaaacggcggtggc
cgcccacaggagagcgatggtgattctatagtagcggagtcgcggactgatgccatgtcg
ttggattctgctcctgtcgtgggtggaggggggggaacaataacttcacccggaaaccta
ccgttagcgaaacgtcaacgtcgggagtcaggcgcagatcctattgctgcagatgttttt
gagattgacgcggcaagagaggttcctgcgtcaagtgggctaacgtcccaggatacagaa
ggaaaatctatcatcatcccgcaccaagtacgccatcaggtttcccttcccacggactac
caatacaaaccgattgagaatcacatattcgttgaacctccagcaagagcgtatggcttc
accctagaccctttccagaagacgtcggtggctgcaatcgagcggggagagagcgtgctg
gttagtgcgcatacaagtgccggaaaaactgttgtggcggaatatgcaattgcgcagagt
ctgcgggacaaccagcgggttatatacactagtccgatcaaagctctgagcaatcagaaa
tatcgggagtttagcgcagaatttggagatgtcgggctcatgaccggagacaccactata
aacccaaacgcaacttgtttggtaatgacaactgagattttgaggtctatgctctacagg
ggttcggaggtcatgagagaagttcaatgggtcgtgttcgatgaaattcattatatgcga
gacaaagcccgcggtgttgtctgggaagaaacaatcatcctcctaccagacaaagtgaga
tacgtctttttatctgcgacaattcctaatgccatgcaatttgccgaatggatttgcaaa
actcacaaccagccatgtcacgtggtttacactgatttccgccccacaccccttcaaact
tacctttttcctgctggtgcagatggggacaaccctggcgatatcaatgggcgaaaaggt
agaggaaggagtggtccttccgacatatataaaattgtcaaaatgattatgatcaaaaat
tataatcctgtaattgtgttctgctttagtaagcgggagtgtgagagccttgctcttcaa
atgagctcactcgcattcaacgacgacgctgaaaaggaaatggtgggaaaggtattcggc
aacgctattagctctttatccgaggaggatagagggctttcccaaatccaacatgtctta
cctcttttgcgtcggggtatcggtattcaccactcgggactcctccccattctaaaagag
gttattgagattcttttccaagaaggacttatcaaggtcttatttgcgactgaaactttc
tcaatcggactcaacatgcctgctaaaacggttgtatttacaaatgttaggaaatttgac
ggtaaagagcaacgatgggtatcgccctcagaatttgttcaaatgtcaggtcgcgcaggg
cgtcgtgggctggacgatcgtggtattgtcatcctaatgttagatcaaactttagagcct
gcaattgctcgcgagatcgtcaaaggagaacaggataggcttaattctgcattctacttg
ggttacaacatgattctcaatctcatgagagttgaaggaatatcgcccgaatacatgctg
gaaaagtgtttcttccagttccaaaatcatgcgggtgctgcagggcttgaaaaggaattg
agcgagcttgagactgagaaaataaatacggttatcgaggatgagccgaccgtccgagag
taccatgacctacggcaaaaacttgacggctacaccaaagaaatgcgcgaagtaattaac
caccccaattactgtctacagtttatgcaacctgggagacttgtaaaagtgaagtatctc
aattatgattttggatggggcgccgtcgtcaactacaccaagagacttcgttcaaggagt
ggagaggagttttcgccccaggaatcttatatcgtcgatgtccttctaaacatcgcctct
gacacgtcgtcttttactcgacctggtcaggaactccccacaggagtgaggccccctagc
gaaggcgataacggcaagatggaagttgtacctatcttactttcctgtttagctagtatc
tcaggcctccgtattttcctccccaaggatatgaaatcacaggagcagagaaatagtgcc
agaaaaaatctcgatgaagtaaaaagacgattcgcagatggtatctcagtccttgaccct
attgaaaatatgggtataatcgacgattcgttcaagaatcttcttcgtaaaatcgaggtt
cttgaatcgcgtttgctctccaaccctctccataactcccctagattgaaggtcctatat
aacctttacaatcacaaagttgaattgcaagagaagattaaggcagtaaggaaacggata
aatcttgcgcattcagtgatgcaactggaagaactcaagtaccgtaagcgcctgcttagg
cggctcgggtttattgatgaattagacactattcagctgaaagcccgtgttgcatgtgag
attagctctggtgatgaacttctcatcagtgagctcctttttaaccgggtcttcaatgag
ctctcacccgaacaaaccgctgcgctcctctcttgtttttaccacgaattttggcctcgg
ctaatggtgcgttgtagcaaacccgagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
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nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagattatt
acctcttctaattcagattatcctatgtga
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