Tuber melanosporum: GSTUM_00010494001
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Entry
GSTUM_00010494001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12601
superkiller protein 8
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00010494001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00010494001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
GSTUM_00010494001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
ANAPC4_WD40
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Ribosomal_L32p
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
eIF2A
Beta-prop_WDR19_1st
Cytochrom_D1
Beta-prop_SCAP
Beta-prop_SPT8
WDR90_beta-prop_4th
WDR54
PALB2_WD40
Beta-prop_TEP1_C
WD40_RFWD3
DUF7165
B-prop_COPA_B_2nd
Beta-prop_EIPR1
Beta-prop_NUP159_NUP214
Lactonase
Beta-prop_Nup120_160
PQQ_2
VID27
Zn_ribbon_3
tify
Motif
Other DBs
NCBI-GeneID:
9187348
NCBI-ProteinID:
XP_002841377
INRA:
GSTUM_00010494001
UniProt:
D5GM25
LinkDB
All DBs
AA seq
388 aa
AA seq
DB search
MATPLLSVTRLSILHSMGSFLPILPTTIHLNIPNPLPGIWESILRAVPKKKQSHSRKRMR
QLAGKALQDITALNKCPACGKVKRQNMLCEPSAHPSDIFAIAANPAYAISAGGDSSIQVW
SLHEPDHPLVHKFENAHPLGVHHLATNKDGRFAASSGFDGAINIWDLETLSHIKQIAKGR
SSGEIWAIALSPTGSFMSATTYNGRVCVYDVFGAGEKVREYETKGSFGMSVDISTDGRLV
ASGHENGGVYIFNNETGKIHHSLPGLIKTVRSVAFSPGGRLLAAAGDSNIIALYDVISGE
QVGNLSGHSSWIFSVSWSKTGEYILSGAFDGKVKVWSTDTKTCVATHTENDKALYGVKWI
PKSSGIGEGFLTAGANGKLCFYREATGS
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcctctcctctcggtcactaggcttagtattcttcactcaatgggatcattc
cttccaattctccctaccacaatccacctcaacataccaaaccccttacccggtatttgg
gaatctattctccgggccgtacccaagaagaagcaaagccactcgagaaaacgaatgcgg
caattggccgggaaggctttgcaagacatcactgccctcaataaatgcccggcttgtgga
aaagtcaagaggcaaaatatgctgtgcgagccatcagcacatccttccgacatatttgct
attgcagccaatccagcatacgctatttctgctggaggggactcaagcatacaagtttgg
agcctacacgagccagatcaccctctagttcataagtttgagaatgcacatcccctcgga
gttcaccatcttgctaccaacaaagatggcaggttcgcggcaagttctggctttgatgga
gcaatcaatatatgggatctcgagactctttctcacattaagcagatcgcaaaagggaga
tcatcaggcgaaatttgggccattgccctgtcacctactggaagctttatgtctgctacc
acttataatggaagggtatgtgtctatgatgtctttggagccggtgaaaaagtccgggaa
tatgagacaaaaggaagctttggaatgagtgttgatatttctacagatgggaggcttgta
gcttcggggcacgagaatggcggagtttacatttttaacaatgagaccggcaaaatacac
cactcattgcccggcctcatcaaaacagtcagatccgtagcattctctccaggaggaaga
ctactcgcggcagcaggcgactccaatataattgcattgtacgatgtgatatctggggag
caagttgggaatctgtccggtcatagtagctggatcttttcggtttcttggagcaaaact
ggcgaatatattctcagtggtgcttttgacggaaaagtcaaagtctggtcgaccgatacg
aagacctgtgttgcaacccacacggagaacgataaagctctgtacggggtaaaatggatt
cccaaatcctccggtataggcgaaggatttctcacagctggagcgaacgggaagttatgt
ttttaccgcgaagcaacaggcagctga
DBGET
integrated database retrieval system