KEGG   Tuber melanosporum: GSTUM_00010494001
Entry
GSTUM_00010494001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K12601  superkiller protein 8
Organism
tml  Tuber melanosporum
Pathway
tml03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSTUM_00010494001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00010494001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     GSTUM_00010494001
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz ANAPC4_WD40 WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Ribosomal_L32p Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 eIF2A Beta-prop_WDR19_1st Cytochrom_D1 Beta-prop_SCAP Beta-prop_SPT8 WDR90_beta-prop_4th WDR54 PALB2_WD40 Beta-prop_TEP1_C WD40_RFWD3 DUF7165 B-prop_COPA_B_2nd Beta-prop_EIPR1 Beta-prop_NUP159_NUP214 Lactonase Beta-prop_Nup120_160 PQQ_2 VID27 Zn_ribbon_3 tify
Other DBs
NCBI-GeneID: 9187348
NCBI-ProteinID: XP_002841377
INRA: GSTUM_00010494001
UniProt: D5GM25
LinkDB
AA seq 388 aa
MATPLLSVTRLSILHSMGSFLPILPTTIHLNIPNPLPGIWESILRAVPKKKQSHSRKRMR
QLAGKALQDITALNKCPACGKVKRQNMLCEPSAHPSDIFAIAANPAYAISAGGDSSIQVW
SLHEPDHPLVHKFENAHPLGVHHLATNKDGRFAASSGFDGAINIWDLETLSHIKQIAKGR
SSGEIWAIALSPTGSFMSATTYNGRVCVYDVFGAGEKVREYETKGSFGMSVDISTDGRLV
ASGHENGGVYIFNNETGKIHHSLPGLIKTVRSVAFSPGGRLLAAAGDSNIIALYDVISGE
QVGNLSGHSSWIFSVSWSKTGEYILSGAFDGKVKVWSTDTKTCVATHTENDKALYGVKWI
PKSSGIGEGFLTAGANGKLCFYREATGS
NT seq 1167 nt   +upstreamnt  +downstreamnt
atggcaactcctctcctctcggtcactaggcttagtattcttcactcaatgggatcattc
cttccaattctccctaccacaatccacctcaacataccaaaccccttacccggtatttgg
gaatctattctccgggccgtacccaagaagaagcaaagccactcgagaaaacgaatgcgg
caattggccgggaaggctttgcaagacatcactgccctcaataaatgcccggcttgtgga
aaagtcaagaggcaaaatatgctgtgcgagccatcagcacatccttccgacatatttgct
attgcagccaatccagcatacgctatttctgctggaggggactcaagcatacaagtttgg
agcctacacgagccagatcaccctctagttcataagtttgagaatgcacatcccctcgga
gttcaccatcttgctaccaacaaagatggcaggttcgcggcaagttctggctttgatgga
gcaatcaatatatgggatctcgagactctttctcacattaagcagatcgcaaaagggaga
tcatcaggcgaaatttgggccattgccctgtcacctactggaagctttatgtctgctacc
acttataatggaagggtatgtgtctatgatgtctttggagccggtgaaaaagtccgggaa
tatgagacaaaaggaagctttggaatgagtgttgatatttctacagatgggaggcttgta
gcttcggggcacgagaatggcggagtttacatttttaacaatgagaccggcaaaatacac
cactcattgcccggcctcatcaaaacagtcagatccgtagcattctctccaggaggaaga
ctactcgcggcagcaggcgactccaatataattgcattgtacgatgtgatatctggggag
caagttgggaatctgtccggtcatagtagctggatcttttcggtttcttggagcaaaact
ggcgaatatattctcagtggtgcttttgacggaaaagtcaaagtctggtcgaccgatacg
aagacctgtgttgcaacccacacggagaacgataaagctctgtacggggtaaaatggatt
cccaaatcctccggtataggcgaaggatttctcacagctggagcgaacgggaagttatgt
ttttaccgcgaagcaacaggcagctga

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