Tuber melanosporum: GSTUM_00010519001
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Entry
GSTUM_00010519001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
tml
Tuber melanosporum
Pathway
tml03022
Basal transcription factors
tml03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GSTUM_00010519001
09124 Replication and repair
03420 Nucleotide excision repair
GSTUM_00010519001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tml03021
]
GSTUM_00010519001
03400 DNA repair and recombination proteins [BR:
tml03400
]
GSTUM_00010519001
Transcription machinery [BR:
tml03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GSTUM_00010519001
DNA repair and recombination proteins [BR:
tml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GSTUM_00010519001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
9187370
NCBI-ProteinID:
XP_002841395
INRA:
GSTUM_00010519001
UniProt:
D5GM43
LinkDB
All DBs
AA seq
616 aa
AA seq
DB search
MASIAKGSASYKKKDGSLVLEKDSVTWTPANAETPSLKIPVSTITNLQATPATVAKVMIK
VFATKEGGAAEPYVFTFTSASSARMEADVMKEALTTSIQTFKNNSGTATPSSASVGHTTT
AASSTAASGATSAKLASKLTDWSKTRLETDLELQKSLLKADQELSTTFSEAVLSGAVTAD
QFWSTRTHLLRAHAIEREQKRGPYNVLATIKSKTVDNVVKMSLSREAIHDIFDQHPLVKM
VYDDNVPKLPEEEFWSRFFLSRLFKKLKGDKLLPTDNTDPILDRYLGRGDEENSRKRRKL
EHVPRTMDIEGNEQNLSQKKGNAPDLTMRPTRTENVPIIKTLNSLSLKLVDLVTPTDTDP
SQVEDQDERYIIEQRLIDLHSDPEEARIILNIRDQRQFFSASSNADKARKELYSNLKPET
VLQEIQKTLGESNLNLLTALASGGTSKGSKAQLSKATTQIVAAVKDRREQMLNSSGFKNK
SGGLPANVFNSVTLVHATTNEFLRHFWLAFLSGDEKRAGDIVKLVNSLKNSKERIASIAK
TADEERELEKVRKKKEAQEEYKRTGVKPKRKTTEVGGGSKVVEELLAPTIVAVDKALGKY
QAALGKADKGSRTAAG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaatagcgaaaggctcagcttcctacaaaaaaaaggatggatctctcgtcctg
gagaaggactctgtcacttggactcctgcaaatgctgagaccccgtctttaaaaattccc
gtgtcaacaattacaaatctccaggcaacccctgcgacagtggcaaaagtcatgatcaag
gtcttcgcaaccaaagaaggcggtgcagcagagccttacgtcttcacattcacctccgcc
tcttccgctcgcatggaagccgatgtcatgaaggaagcattaaccacctcaatccagacc
ttcaagaacaattccggtaccgcaactccctcctccgcttctgttggccataccactact
gccgcttcctcaactgcagcctctggagccacctctgcaaaattagccagcaaactcaca
gactggagcaaaaccagactggaaacggatctcgaactccaaaaatccctcctaaaagcc
gaccaagagctctcgacaaccttttcagaggccgtcctctctggggccgtaaccgcagac
cagttctggtccacacgcacacatcttctccgtgcgcatgcaatcgaacgggagcagaag
cgcggtccgtacaacgtgctcgccacgataaagtctaagactgttgacaatgttgttaag
atgtctttgtcgcgcgaggccattcatgacatttttgatcagcacccgttggttaagatg
gtttatgatgataatgtgccgaagttgccagaggaggagttctggagtaggttctttctg
agtaggctttttaagaaattgaagggggataagttgctgccgacggataacacggaccca
atacttgatcgttatttggggagaggtgatgaagaaaactcgaggaagcgtaggaagttg
gaacatgttcctagaactatggatattgagggtaatgagcagaacttgagtcagaagaag
gggaatgctcctgatttgactatgagacctacacgtactgagaacgttccgattatcaaa
accctaaatagtcttagcttgaagttggtggacttggtcacgcccaccgacaccgacccc
agccaagtcgaagaccaagacgaacgctacatcattgagcaacgcctgatagacctccac
agtgaccccgaggaagcgcgcatcatcctcaacattcgcgaccaacgccagttcttctca
gcaagcagtaatgccgataaagcgcgcaaagaactctactcaaacctaaaacccgagact
gtactccaagagatccaaaagaccctcggagaaagcaacctaaacctccttaccgctctc
gctagcggtggcactagtaaagggagtaaagcccaactctccaaagctaccactcaaatc
gtggcggcagttaaggaccgcagggaacagatgttgaattccagcgggtttaagaacaaa
tctgggggcttacccgcgaacgtattcaatagcgtaacgcttgtacatgctacaacgaat
gaattcctccgccatttctggctggccttcttatccggggacgagaagcgcgctggggac
atcgtaaagttggttaacagtttgaagaattcgaaggagaggattgcgtccattgccaag
accgctgacgaagagcgagagctggagaaggtgaggaagaagaaggaggcgcaggaggag
tataaaaggactggggtgaagccgaagcggaagactaccgaggtcggcggtgggagtaaa
gttgttgaggagctgctggcaccaacgattgttgcggtagataaggcgttagggaagtat
caggctgcgctaggtaaggcggacaaggggtcgaggactgctgctgggtag
DBGET
integrated database retrieval system
