KEGG   Tuber melanosporum: GSTUM_00010542001
Entry
GSTUM_00010542001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
tml  Tuber melanosporum
Pathway
tml03020  RNA polymerase
tml03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GSTUM_00010542001
  09124 Replication and repair
   03420 Nucleotide excision repair
    GSTUM_00010542001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tml03021]
    GSTUM_00010542001
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00010542001
   03400 DNA repair and recombination proteins [BR:tml03400]
    GSTUM_00010542001
Transcription machinery [BR:tml03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     GSTUM_00010542001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GSTUM_00010542001
DNA repair and recombination proteins [BR:tml03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      GSTUM_00010542001
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N
Other DBs
NCBI-GeneID: 9187390
NCBI-ProteinID: XP_002841415
INRA: GSTUM_00010542001
UniProt: D5GM63
LinkDB
AA seq 180 aa
MFFIHELNRTITLHPSYFGPHMRDYLIHKLHEDVEGSCTGRYFIICVIEYENITLGRIIP
GKGDAEFTITYKAVVWRPFKGETVDGVVSSVNKMGFFAEVGPLTVFVSSHLIPRDIKFDP
TSNPPQFSDNGDQIINKGAHIRIKLMGTRSDVGKMHAIGSIKEDYLGYDIPNYVEMFVFN
NT seq 543 nt   +upstreamnt  +downstreamnt
atgttcttcattcacgaactcaaccgcactattacgcttcatccatcttactttggtcct
catatgagagactaccttatccataaacttcacgaggatgttgagggctcctgtactggg
cgctatttcatcatctgcgttatcgaatatgagaatattactctcgggcgaattattcct
ggcaagggcgacgcagaattcacaatcacctacaaagctgttgtctggcgcccattcaag
ggtgaaactgtcgacggcgtggttagttctgtcaataagatgggcttttttgctgaagtt
ggcccattgactgttttcgtttcgagccatctcatcccccgcgacatcaaattcgacccg
acttccaatccgccgcaattttcggacaatggggatcagatcatcaataagggcgcccat
attcgcatcaagttgatgggaactcgaagcgatgtgggtaaaatgcacgcaattggtagc
atcaaagaggattatcttgggtatgacatacccaactatgtggaaatgtttgtgtttaac
tga

DBGET integrated database retrieval system