Tuber melanosporum: GSTUM_00010661001
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Entry
GSTUM_00010661001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00010661001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00010661001
Enzymes [BR:
tml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
GSTUM_00010661001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTUM_00010661001
mRNA degradation factors
3'-5' decay
Pan complex
GSTUM_00010661001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
WDR55
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
9183249
NCBI-ProteinID:
XP_002841488
INRA:
GSTUM_00010661001
UniProt:
D5GMD6
LinkDB
All DBs
AA seq
1071 aa
AA seq
DB search
MLLFRLHWHLTPTKNFYGLGASKVGLLLTLVPIFENIPVTVVNDRGVISLAARSLHFSIR
RGLAQWNIKHAGFQNLSGFAYTNRGTSEILVGGSQSSMFTVNVDRGTVIGEYSTEDDIKV
MKRNPRAIVYGTGKGDVKLLDMNTFKVVREFPQAHGSTISDLDTQGNTILTCGYSPRQGT
YHLDTLVKVYDLRTNRALAPVGFPSGAAFVRMHPKLSAAAIVASQAGQIQVVDIENPAAI
KLYHANVTSYITAIELAPSGDALALMDADGYLQLWGSPDKLRFTELMNPVEWPEPLVLPN
VAIKDDSPLNSIGMPYYRDVLLSAWPPHEIFNVNKMPQKIDADILAASATKTGYAPYHKR
TPRYCIESTKHTDPPGAVPKFLSQQAKDKGSRNSGDFDDGKLLYGDESRRQFEVPPVFRK
VEIKYSKFGVDDFDFEFYNKTRFSGLETHISNSYMNPLLQMYKFTPLLRNLALHHTATAC
TKDDCMLCQMGFLFDMLDKANGQNCQATNFLKTFSSLPTADRHGVLEEDSSSGELLSSMI
QSLNRFLLDQISMDQRTWQNDSRALEEAITIGATKSQRCNICGKESRPLGDTNVTDMIYP
PKHSKPVQSFSALVKQSIQMDTVQKGWCDKCQRYQQQAMRKLVRRLPKIMVFNATTNEKS
LTYVREHWSTPGWLPDEIGVLVTNGQLSVYQGEDLIIMRERCENLVTFDLVGFVAEITPE
EKRNTHLISFVNVAFSSTDRTEESTWHIFNDFLVTPVRKEDALDFAPKWKMPSVICFQAR
DPSNAIDNSWRNHLDTSLLYIDYSFGYGYSERECKSLEQHEEPKPGTLVALDAEFVSMQN
EETEVKADGSRSVVRPSRLGLARVSVLRGGGVDEGVAFLDDYIITREPVVDFLTEFSGIH
VGDLDPSTSKHALVPLKVAYKRLWLLLNLGCVFVGHGLLKDFRIINIHVPKEQVVDTVDL
FVLRSSQRKLSLRFLAWVVLREEIQLDTHDSIEDSYTALRLYKKYLEYSDAGVLEPMLNN
IQIEGMKTGFKPPPRGFLAEHRTDTPSIVQEGRSEANTPQPRGGVPKWLGA
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgttccgcctacattggcatttgacaccaaccaagaacttttatgggttggga
gcgagcaaggtcgggttacttcttactttagtcccgatcttcgaaaatataccagttacc
gtggtgaatgatcgaggggtaatatctttggcagcgaggagtttgcacttttctatccga
agggggctggctcaatggaacataaagcatgcaggttttcaaaatttatctggttttgcc
tacacgaatcgaggaacctccgagatcttggttggtggtagtcagagctcaatgtttacc
gtgaatgtggaccggggaactgtgataggagagtattccacagaggatgacataaaggtt
atgaagaggaatcctagggccatcgtgtacgggacaggaaaaggtgatgtgaagctgttg
gacatgaacactttcaaggtagtcagggagttcccacaggcacatgggagcacaatttcc
gatttggatactcaaggaaataccatcttgacatgcggctactcacctcgacagggaaca
tatcacctcgacaccctcgtcaaagtctatgaccttcggacgaacagagcactcgctccg
gtcgggtttccttctggtgctgcctttgttcgcatgcaccctaaactctcagctgctgca
attgttgcatcacaagctggccagattcaggtagttgacatcgagaacccggcagcaata
aagctctaccatgcgaacgtaacaagctacattactgcgatagagctagctcctagtgga
gatgccttggctctgatggatgcagatggttatctccaactctgggggtctccagacaag
ctcaggttcactgagctcatgaatccagtggagtggccggaaccccttgtactccctaat
gttgctatcaaggacgattcccctctaaactctattggtatgccttattaccgtgatgtg
cttttgtccgcctggcccccgcacgagatcttcaatgtcaacaaaatgcctcagaagatc
gatgcggacatcttggcagcctctgccacgaaaaccggatatgccccgtaccacaagaga
accccccggtattgcatagaaagcaccaagcataccgacccccccggagcagttccaaag
ttcttaagtcagcaagcaaaggacaaaggttcccggaactccggcgattttgacgatgga
aagttgctctatggagacgagtccaggaggcagtttgaagtcccgccggtgtttagaaag
gttgaaattaagtatagtaaatttggtgttgacgattttgactttgaattctataacaaa
actagattttcaggactcgagactcacatatcaaactcatacatgaatccgttattgcag
atgtataaattcacacctttgcttcggaacttagcgctccatcatacggctacggcatgt
acgaaagatgattgtatgctatgtcaaatgggcttcttatttgatatgctggataaagca
aatggccaaaactgccaagctacaaattttctcaaaacgttcagctctctacctaccgct
gataggcacggtgttttagaagaagattcatcgagcggcgagctcctgagctctatgata
caaagccttaaccgattcctgctggatcagatatccatggatcagagaacctggcaaaat
gattcgagagcgcttgaggaggcgattacgattggagccactaaaagccaacgctgtaat
atctgcggcaaagagtcacgtcctctaggcgacacaaatgttacagatatgatatacccc
ccaaaacatagcaagcctgttcagtccttttctgccttggtaaaacaaagtatacagatg
gacacagttcaaaagggatggtgtgacaagtgccagcgctatcagcagcaagcaatgagg
aagttggtgagaagactaccaaagataatggtgtttaatgctaccacaaacgagaaaagt
ctgacatatgttcgagagcattggtcaactcctggatggttgcccgatgaaattggtgtg
ctggtcaccaatggccaactaagtgtgtatcaaggcgaagacttgatcatcatgagagaa
aggtgtgaaaatttggtgacatttgaccttgtgggcttcgtggcggagataacaccggaa
gagaagagaaatacacacttaatatcattcgttaatgttgccttctcgtcgaccgacagg
accgaagaaagtacttggcacatattcaacgacttcctcgtcacacccgtaaggaaggag
gacgcgcttgactttgcgccaaaatggaagatgccttccgttatatgtttccaggccaga
gaccctagcaatgccattgacaactcatggagaaaccatctagatactagcttgttatat
atcgactactcctttgggtatggttattcagagcgcgaatgcaaatctttggaacagcac
gaggagcctaaaccaggaacgctagtcgccttagatgccgagtttgtatccatgcaaaac
gaggaaaccgaggtaaaagccgatggttcaaggtccgtagtgaggccaagtaggttaggc
ttggctagggtatctgtgcttagaggggggggtgtggatgagggtgtagcgttcctggat
gattacattatcacgagagaaccggttgttgactttttaaccgagttttccggaatccat
gtgggcgatttggatccgagcacttcaaaacatgctctggtcccgttgaaggttgcatat
aagaggctttggctattgcttaatttaggctgtgtgtttgtggggcacgggctgttgaag
gatttcaggattataaatatacatgttccaaaagaacaggtagtggatacggttgatttg
tttgttttacggagctctcagaggaaactgtctctacgttttctagcatgggtagttcta
agggaagagatccaacttgacacccacgactcaattgaagactcgtacactgcgctccga
ctgtacaaaaagtatctcgaatatagcgacgccggcgtcttagaaccgatgttaaacaac
attcagatagagggaatgaagaccggtttcaagccaccgccaagggggttcttggccgag
catagaacagacacgccttccatagtgcaggagggacgatcagaggcaaatacaccgcaa
cctagggggggggtgccgaaatggcttggagcctaa
DBGET
integrated database retrieval system
