Tuber melanosporum: GSTUM_00010675001
Help
Entry
GSTUM_00010675001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tml
Tuber melanosporum
Pathway
tml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTUM_00010675001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tml03041
]
GSTUM_00010675001
03009 Ribosome biogenesis [BR:
tml03009
]
GSTUM_00010675001
Enzymes [BR:
tml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSTUM_00010675001
Spliceosome [BR:
tml03041
]
Complex A
U2 snRNP components
U2 related factors
GSTUM_00010675001
Complex B
GSTUM_00010675001
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
GSTUM_00010675001
Ribosome biogenesis [BR:
tml03009
]
Eukaryotic type
90S particles
Helicases
GSTUM_00010675001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
9182117
NCBI-ProteinID:
XP_002841500
INRA:
GSTUM_00010675001
UniProt:
D5GME8
LinkDB
All DBs
AA seq
761 aa
AA seq
DB search
MSTTEDRKRKKPQEKESQTNSPKRHKSEPVSPPSGNTKKPEIDPSKNPYLAHTYPAEENK
SDWGPLAGFKRHRTTTKMANIAEDGPFNPFSGNKLSDRYFNILEGRRELPIAAQRDEFLN
MFHKSQTMTTQIPQYVLFDDLPHLNGYKQVACTQPRRVAAMSVAKRVADEMDVELGHEVG
YSIRFEDKTSPNTILKYMTDGMLLREAMHDHLLERYSCIILDEAHERTLATDILMGLLKN
VVERRPDLKLIIMSATLDAQKFQHYFNDAPLLAVPGRTHPVEIYYTPEPERDYLEAAIRT
VLQIHTTEPEGDILLFLTGEEEIEDACRKINAEVDLLVREADVGPLKSYALYGTLPPQQQ
QRIFEPAPSPFKPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESL
LVSPISKASAQQRAGRAGRTRPGKCFRLYTESAFKKELIDQTYPEILRSNLANTVLELKK
LGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDDGNLTTLGKLAAEFPLDPALAVMLI
SSPEFFCSNEILSLTALLSVPQLFVRPLNNRQRADEMKKLFAHEDGDHLTMLNVYHAFKQ
QDSQPAWCREHFLSYRALQSADNVRAQLQRIMERLEIPLVSTDFSEKSYYENIRRALVSG
FFMQVAMKNSPGKAYITVKDNQDVLIHPSTALEKDSPWLVYNEFVLTTKSFIRTVTHIRP
EWLLEIAPGYYDVKDFREGPVRTGLERTMDKVRKRNALKRR
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaactgaagatagaaaacgcaagaagccccaagaaaaggaatcgcagaccaat
tcgcccaagcggcacaaaagcgaacctgtctctcctccctctgggaacacaaaaaagcct
gagatagacccatcaaaaaatccctatctcgctcatacgtaccccgcggaagagaacaag
agcgattgggggcccttggccggattcaagcgacaccgcacgacaacgaagatggcgaac
attgccgaggatggcccttttaatccgtttagcgggaataaattgagcgaccgttacttc
aacattttggagggaagaagagaactacctattgccgcacagagggatgaatttttgaac
atgtttcacaagtcccagaccatgaccacccaaatcccccagtatgttctattcgacgat
cttcctcacttaaatggttataagcaggtagcatgtacccaaccccgccgagtagctgcc
atgtctgtggcaaaacgtgtggccgatgagatggatgtcgagttaggccacgaggttggc
tatagtattcgttttgaggataaaaccagcccaaacactatcctcaagtacatgacagac
ggtatgttacttcgggaagccatgcacgaccacctacttgaacgctactcctgcattatt
ctcgacgaagcacacgagagaactctagcaacagatattcttatgggactacttaagaat
gtggtagaaaggcgcccggatttaaagctcattatcatgtctgctactctcgacgcccag
aagtttcaacattatttcaatgacgctccattgttggcagttcctggtcgcactcaccct
gtcgaaatttattacactccggaacctgagcgggactacctggaagctgccatacgtacc
gtgctccagatccacacgactgaaccggaaggtgatattcttctgttcctcacaggtgaa
gaggagatcgaggatgcttgtcggaagatcaatgcagaggttgacttgctcgtaagagag
gcagacgttgggcctctaaaatcttatgctctttacggcactctccccccccaacagcag
caaaggatttttgaacctgccccgtctccattcaagccaggtggaccgcctggacgcaag
gttgttgtatccacaaatatcgccgagacctcattgacaatagacggaatagtgtacgtg
gtggacccaggatttagcaagcagaaggtctacaacccgcgtatccgcgttgagtcctta
cttgtttcacctatttccaaggcttctgcgcagcaacgcgctggtcgtgctggtagaact
cgacctggtaaatgtttcagactttacaccgagtccgcattcaagaaggaactcattgat
caaacataccccgaaatcctgcgcagcaatctcgcaaataccgtattggagttgaagaag
ctcggcatcgacgacctagtccacttcgacttcatggatcctcctgccccagaaactatg
atgagagccttggaagaactgaactacctcgcctgtctcgacgatgacggaaacctcacc
accctcggtaaactcgcagcagagttccccctagaccccgctctagctgtaatgctcatc
agttccccggagttcttctgttcgaacgagatactctccctgaccgccctcctatcagtc
ccacagctcttcgtccgtcccttaaataatcgccagcgcgccgacgagatgaaaaaacta
ttcgcgcacgaggacggcgaccacctcacaatgctaaatgtctatcacgccttcaagcag
caggatagccaaccagcctggtgccgcgagcacttcctcagctatagagccctacagagc
gcagataacgtgcgcgctcaactacagcgcataatggaaagactagagatcccgcttgtc
agcacggacttttccgagaagtcctattacgagaacatccgcagagcccttgtttctggc
ttcttcatgcaagtcgccatgaaaaactcccctgggaaggcgtacatcaccgttaaagac
aaccaggacgtcctaatccaccccagtacagccttggaaaaagattccccatggctcgtc
tacaacgagttcgtcctcacgacaaagagctttatccgcacggtcacccacattcgccct
gagtggctgctggagattgcgccgggctactatgatgtcaaggactttcgcgagggtccc
gttaggaccgggctggagagaacaatggataaggttcggaagaggaatgctttgaagagg
agatag
DBGET
integrated database retrieval system