Tuber melanosporum: GSTUM_00011325001
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Entry
GSTUM_00011325001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K15541
protein MPE1
Organism
tml
Tuber melanosporum
Pathway
tml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GSTUM_00011325001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00011325001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
GSTUM_00011325001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
zf-CCHC
zf-C3HC4_2
zf-RING_2
zf-CCHC_3
zf-C3HC4_3
zf-CCHC_5
Rtf2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
9186172
NCBI-ProteinID:
XP_002841905
INRA:
GSTUM_00011325001
UniProt:
D5GNK3
LinkDB
All DBs
AA seq
687 aa
AA seq
DB search
MSSSVFFRFKSHKESTRVTFDGTGISVFELKRQIIVLNRLGDGTDFDFSIYNADTNEEYD
DDTTIIPRSTSIIAARLPPSKPGRGTAQRYVSGKAPVNALPNAGRREKNFGNGGSVVKKN
GSPQPTSSAPVLTGGESEEEKIAAMFQASSEQWNKTQEQMANATPIHRGSQGFKKNNAPA
PGHPPPNGYICYRCGEKGHWIQQCPTNADPTFDGRPRVKRTTGIPRSFLKTVEKPLPPSG
DDDNTTAHSNPTSVMVNADGEYVVAQPDQASWESYQKKAATNSKVAAPVGSKELQDKGIE
CLICHKLLRDASKTPCCGKVYCEDCIHTTLLETDFVCPNCDAKEILLDAIVPDEDIRKKV
EEYLKERDAKEKDLKEREKSKSPSVSSSAGKAKEPSASQRGDGTPSAAPSHGRAPPSVHG
SMAGNFGPNPRKRQADEEFEPRIPRGPAAMRNNNNPQPQQPPPHPMQPLQQQSGGYNNNG
RMFNPQQVFHHQFPNQNTHQPTPLPPYQFQAFNQYPSGMNGMDNMNAMNGNYYPQNGHYV
PNGMVGMGGMGMNGMMGGGMGGGMGGGMGGGMGGGMGGGMGGMGPHNPYHMGMNGGGGGG
AAMNVSNGHGGNPMINTSFAQQFQHQHQHPPGDPRAKFGYFPNQQKTVFSEPFPSEEDSP
YMRKPVNPHRHSRPKRIRPSDFKALGE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctctgtatttttcagattcaagtctcacaaggagtcaacacgagtaactttt
gacggtactggcatttcggtttttgaattgaagagacagattatcgttctcaaccgtctt
ggggatggcaccgactttgatttctcaatttataatgccgatacaaatgaagaatatgac
gatgatactactataattccccgttctacatctatcattgctgcccgtctcccccccagc
aagccagggcgtggaactgcccaacgctatgtcagtggaaaggcgcccgtgaatgctctt
cctaatgctgggcgcagagagaagaactttggaaatggtggctcggttgttaaaaagaat
gggagtcctcagcctacgagcagtgctcccgttttaaccggaggagaatctgaagaggaa
aagattgcagcgatgtttcaagcttctagtgagcagtggaataaaacccaggagcagatg
gcaaatgctactcccattcatcgtggaagccagggtttcaaaaagaacaatgcaccagct
ccaggacacccaccaccaaatgggtatatttgttatcgttgcggcgagaaaggtcattgg
attcaacagtgtcccacaaatgctgatcccacttttgacggacgccctcgcgttaagcgt
acgactggtattccccgtagtttcctcaagacagttgagaagccgcttcccccatccggg
gatgatgataataccactgctcactctaacccgacctcggtcatggtaaatgctgatggc
gaatatgttgtcgctcagcctgatcaggcctcatgggagtcttaccagaagaaggcggca
actaattcaaaggttgcagcaccagttggtagtaaggagttgcaggataaaggaatcgag
tgtctaatctgtcataaacttctgcgtgatgcatcaaagaccccgtgctgcgggaaagtg
tactgcgaagattgtattcacactacattgctggagaccgactttgtctgcccgaattgt
gatgcaaaggaaatcctcctggatgccattgtgcctgatgaagatatcagaaagaaggta
gaggaatacctaaaggaaagggatgccaaggaaaaggacctgaaagagagagagaaatcc
aagagcccttctgtatcatcttctgctggtaaagcaaaggaacctagtgcctcccaacgc
ggcgacgggacaccctctgctgcgccctcccatgggagagcacccccgtctgttcatggt
tctatggctgggaattttggccctaatccgagaaagagacaagcagatgaagagttcgag
cctagaatcccccgtggcccggcggccatgagaaataataataaccctcagccccagcag
ccaccgccccatccaatgcaaccccttcaacagcagagtggtggatataataacaatggc
cggatgttcaatccccaacaggttttccatcaccagttcccaaatcaaaatactcatcaa
ccaactcccttgcctccgtatcaattccaggccttcaaccagtatcctagtggcatgaac
ggcatggacaacatgaacgctatgaacggcaattactatcctcagaacggtcactatgtt
cccaacgggatggtggggatgggcggaatgggtatgaacggcatgatgggcggtggtatg
ggcggtggtatgggcggtggtatgggcggtggtatgggcggtggtatgggtggcggtatg
ggtgggatgggtcctcacaacccataccatatggggatgaacggtggtggcggcggcggg
gcggccatgaatgttagcaacggacacggtggaaatccaatgatcaacacgtccttcgcc
cagcagttccagcatcagcaccagcatcctccgggtgatccacgcgctaagttcgggtac
ttccccaaccaacagaagaccgtcttcagtgagcccttcccaagtgaggaggacagtcct
tatatgagaaaaccggtcaacccgcacagacattcccgacccaaacgaatccgcccttca
gacttcaaggcccttggagaatag
DBGET
integrated database retrieval system
