Tuber melanosporum: GSTUM_00011471001
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Entry
GSTUM_00011471001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K13126
polyadenylate-binding protein
Organism
tml
Tuber melanosporum
Pathway
tml03015
mRNA surveillance pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GSTUM_00011471001
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00011471001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00011471001
03041 Spliceosome [BR:
tml03041
]
GSTUM_00011471001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
GSTUM_00011471001
mRNA cycle factors
Stress granule specific factors
GSTUM_00011471001
Spliceosome [BR:
tml03041
]
Complex C
Other components
Complex C specific factors
GSTUM_00011471001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_7
RRM_Nup35
RRM_3
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
9182811
NCBI-ProteinID:
XP_002841985
INRA:
GSTUM_00011471001
UniProt:
D5GNT3
LinkDB
All DBs
AA seq
374 aa
AA seq
DB search
MSAEVSSSPAPQEQIEQPINGSSPAQDPTSDSDANNSSVAAPHSAPHNSHTSASLYVGEL
EPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERALEELNYTLIK
GRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFSNS
RGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFDEMKANFTNVYVKN
IDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRGFGFVNFQEHQHAAKAVEELHESELK
GQTLYPLELRKLASTRVSICTSRISMTRSTTSVSARSLPRMELSLPPRLCVMSLVRVRDL
VLSASLARRKLARP
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgaagtttcttcatccccagctccccaggagcaaatcgagcagcccatcaac
gggtcttctcccgcccaggatcccacttccgatagcgatgctaataactcatccgtggct
gctccacacagcgccccccacaactcccacacttccgcctccctttacgtcggggagctt
gagccgtctgtgactgaggcaatgctctttgagttgttttccactattggaaacgttgca
tcgattcgtgtttgccgtgatgcagttacccgccgttctctcggatattcttacgttaac
tacaacaataccgctgatggtgaacgtgcccttgaggagcttaattatactttgatcaaa
ggccgtccttgccgcattatgtggtcgcagcgtgatcctgctctccgtaagactgggcaa
ggcaatgttttcatcaagaatctcgatactgccattgacaataaggctcttcatgatacc
tttgctgctttcggtaatatcctttcctgtaaggttgcccaggatgagtttagcaactcc
cgcggatacgggtttgtccactacgagactgctgaggctgccaataatgcaattaagcat
gtcaatggtatgcttctaaacgagaagaaagtatttgtcgggcatcatatccctaagaag
gatcgtcagagcaagtttgatgaaatgaaggccaactttacaaacgtttacgttaagaat
atcgatcccgaggtcacggatgaggaatttagaactatgtttgagaactatggtcctatc
acttccgctagcctttccagggaccaagatggcgttagtagaggatttggatttgttaat
ttccaagagcatcagcatgccgccaaggctgtcgaagagctccatgagagtgagcttaag
ggtcagactctttatccgctagagttgagaaagctagcaagtaccagggtgtcaatttgt
acatcaagaatctcgatgacgagatcgacgacgagcgtctccgccaggagtttgccccgt
atggaactatcacttccgccaaggttatgcgtgatgagcttggtaagagtaagggatttg
gttttgtctgcttctctagcccggaggaagctagcaaggccgtga
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