Tuber melanosporum: GSTUM_00011728001
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Entry
GSTUM_00011728001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K10752
histone-binding protein RBBP4
Organism
tml
Tuber melanosporum
Pathway
tml03082
ATP-dependent chromatin remodeling
tml03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
GSTUM_00011728001
03083 Polycomb repressive complex
GSTUM_00011728001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tml03036
]
GSTUM_00011728001
Chromosome and associated proteins [BR:
tml03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
GSTUM_00011728001
Histone modification proteins
HAT complexes
HATB complex
GSTUM_00011728001
HDAC complexes
Sin3A-HDAC complex
GSTUM_00011728001
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
GSTUM_00011728001
PRC2.2
GSTUM_00011728001
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
GSTUM_00011728001
Heterochromatin formation proteins
Other heterochromatin formation proteins
GSTUM_00011728001
Chromatin remodeling factors
NuRD complex
GSTUM_00011728001
NuRF complex
GSTUM_00011728001
NuRF complex (fruit fly)
GSTUM_00011728001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
CAF1C_H4-bd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_WDR75_1st
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_IFT140_1st
MIOS_WD40
NBCH_WD40
WD_LRWD1
SGL
Beta-prop_SCAP
Beta-prop_DCAF12
Beta-prop_RIG_1st
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
9186572
NCBI-ProteinID:
XP_002842141
INRA:
GSTUM_00011728001
UniProt:
D5GP67
LinkDB
All DBs
AA seq
436 aa
AA seq
DB search
MSTNMDDDIDMDPSLRDHEEQIVVDKIINEEYKIWKKNAPFLYDLILSSALEWPTLTTQW
FPDKQKHTGKNYSTHRLLIGTHTSGNDTNYLQIAEVQLPNPVTEHDPNRYDEDKEEIGGY
GGGAECRLHIQQKMVHEGEVNKARYMPQKPDLIATMCADGNVLVFDKTKHPLMPTNTSKC
TPQMTLVGHGKEGYGLNWNPHKEGRLMTGSEDSTVRLWDLNSYTKTNTTLHPIHTYTHHS
AIVNDVAYHPCHDALFGSVSDDHTLQIVDTRSSDTTTAVHKVVAHADAVNSIAFNAASDY
VVATASADKTVALWDLRNLKLKLHSLQGHNAEVNGLSWHPHEEPILASSSADRRIIFWDL
ARIGEEQSPEDAEDGPPELLFMHGGHTNRVSDFAWNPNDPWVMVSAAEDNLIQCWKVSSA
IVGKDMEDVPVGELET
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccaacatggacgacgatatcgacatggaccccagtctccgcgaccacgaggag
cagattgttgttgacaagatcatcaatgaggagtacaaaatctggaaaaagaatgcgcca
tttctttatgacctaatcttgagctccgcattggaatggccgacattgaccactcaatgg
ttccccgataaacagaaacacacagggaaaaactattcgacccatcgcctacttatcggg
acgcacaccagcggtaacgacactaactatctccaaattgctgaagtgcagcttccgaac
ccagtcactgaacacgatccgaatcgatacgatgaagacaaagaggagattggcggctac
gggggcggggcagaatgtcgtctacacattcagcagaaaatggttcacgagggagaggtc
aacaaggcgcggtacatgccgcagaagcctgacttgattgctacaatgtgcgcagacgga
aatgtgttggtgtttgataagaccaagcatcccctaatgcctaccaatacttctaaatgc
actccacagatgactttggttggccatggaaaagagggttacgggttgaattggaatcct
cataaagaaggccgcctgatgaccggatctgaagattctaccgttcggctttgggacctc
aactcttataccaagactaatacaaccctacatcctatccacacttatacccaccattca
gctatcgtcaatgatgtcgcctaccacccttgccatgatgctcttttcggttccgtatcg
gatgaccacacccttcaaatcgtggatacccgttcctcggataccacgactgccgtgcat
aaagttgtggcccatgcggatgccgtcaattcgatcgccttcaatgcggcttctgactat
gttgtcgcaacggcatctgcagacaagaccgttgccctatgggacttgcgcaatctcaag
ttgaagttacattctctccagggccataatgcggaggtcaacggactgagctggcaccca
catgaagagcccattcttgccagttcgagcgctgatagaaggatcatcttctgggatttg
gccagaattggtgaggagcaatctccggaggatgccgaggatggaccacctgagctgttg
tttatgcacggtggacataccaacagagtttcagactttgcctggaatccgaacgatcca
tgggtgatggtaagtgctgctgaagataatttgattcagtgttggaaagtctctagcgcc
attgtcggcaaagatatggaggatgtccctgttggggagttagaaacgtaa
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