KEGG   Tuber melanosporum: GSTUM_00011728001
Entry
GSTUM_00011728001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K10752  histone-binding protein RBBP4
Organism
tml  Tuber melanosporum
Pathway
tml03082  ATP-dependent chromatin remodeling
tml03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    GSTUM_00011728001
   03083 Polycomb repressive complex
    GSTUM_00011728001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tml03036]
    GSTUM_00011728001
Chromosome and associated proteins [BR:tml03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     GSTUM_00011728001
  Histone modification proteins
   HAT complexes
    HATB complex
     GSTUM_00011728001
   HDAC complexes
    Sin3A-HDAC complex
     GSTUM_00011728001
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     GSTUM_00011728001
    PRC2.2
     GSTUM_00011728001
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     GSTUM_00011728001
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    GSTUM_00011728001
  Chromatin remodeling factors
   NuRD complex
    GSTUM_00011728001
   NuRF complex
    GSTUM_00011728001
   NuRF complex (fruit fly)
    GSTUM_00011728001
SSDB
Motif
Pfam: WD40 WD40_Prp19 CAF1C_H4-bd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_EML_2 Beta-prop_WDR75_1st WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_IFT140_1st MIOS_WD40 NBCH_WD40 WD_LRWD1 SGL Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 9186572
NCBI-ProteinID: XP_002842141
INRA: GSTUM_00011728001
UniProt: D5GP67
LinkDB
AA seq 436 aa
MSTNMDDDIDMDPSLRDHEEQIVVDKIINEEYKIWKKNAPFLYDLILSSALEWPTLTTQW
FPDKQKHTGKNYSTHRLLIGTHTSGNDTNYLQIAEVQLPNPVTEHDPNRYDEDKEEIGGY
GGGAECRLHIQQKMVHEGEVNKARYMPQKPDLIATMCADGNVLVFDKTKHPLMPTNTSKC
TPQMTLVGHGKEGYGLNWNPHKEGRLMTGSEDSTVRLWDLNSYTKTNTTLHPIHTYTHHS
AIVNDVAYHPCHDALFGSVSDDHTLQIVDTRSSDTTTAVHKVVAHADAVNSIAFNAASDY
VVATASADKTVALWDLRNLKLKLHSLQGHNAEVNGLSWHPHEEPILASSSADRRIIFWDL
ARIGEEQSPEDAEDGPPELLFMHGGHTNRVSDFAWNPNDPWVMVSAAEDNLIQCWKVSSA
IVGKDMEDVPVGELET
NT seq 1311 nt   +upstreamnt  +downstreamnt
atgtctaccaacatggacgacgatatcgacatggaccccagtctccgcgaccacgaggag
cagattgttgttgacaagatcatcaatgaggagtacaaaatctggaaaaagaatgcgcca
tttctttatgacctaatcttgagctccgcattggaatggccgacattgaccactcaatgg
ttccccgataaacagaaacacacagggaaaaactattcgacccatcgcctacttatcggg
acgcacaccagcggtaacgacactaactatctccaaattgctgaagtgcagcttccgaac
ccagtcactgaacacgatccgaatcgatacgatgaagacaaagaggagattggcggctac
gggggcggggcagaatgtcgtctacacattcagcagaaaatggttcacgagggagaggtc
aacaaggcgcggtacatgccgcagaagcctgacttgattgctacaatgtgcgcagacgga
aatgtgttggtgtttgataagaccaagcatcccctaatgcctaccaatacttctaaatgc
actccacagatgactttggttggccatggaaaagagggttacgggttgaattggaatcct
cataaagaaggccgcctgatgaccggatctgaagattctaccgttcggctttgggacctc
aactcttataccaagactaatacaaccctacatcctatccacacttatacccaccattca
gctatcgtcaatgatgtcgcctaccacccttgccatgatgctcttttcggttccgtatcg
gatgaccacacccttcaaatcgtggatacccgttcctcggataccacgactgccgtgcat
aaagttgtggcccatgcggatgccgtcaattcgatcgccttcaatgcggcttctgactat
gttgtcgcaacggcatctgcagacaagaccgttgccctatgggacttgcgcaatctcaag
ttgaagttacattctctccagggccataatgcggaggtcaacggactgagctggcaccca
catgaagagcccattcttgccagttcgagcgctgatagaaggatcatcttctgggatttg
gccagaattggtgaggagcaatctccggaggatgccgaggatggaccacctgagctgttg
tttatgcacggtggacataccaacagagtttcagactttgcctggaatccgaacgatcca
tgggtgatggtaagtgctgctgaagataatttgattcagtgttggaaagtctctagcgcc
attgtcggcaaagatatggaggatgtccctgttggggagttagaaacgtaa

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