Tuber melanosporum: GSTUM_00011949001
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Entry
GSTUM_00011949001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
tml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTUM_00011949001
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00011949001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00011949001
03041 Spliceosome [BR:
tml03041
]
GSTUM_00011949001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTUM_00011949001
mRNA degradation factors
5'-3' decay
Lsm complex
GSTUM_00011949001
Spliceosome [BR:
tml03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
GSTUM_00011949001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
9187268
NCBI-ProteinID:
XP_002842289
INRA:
GSTUM_00011949001
UniProt:
D5GPN7
LinkDB
All DBs
AA seq
80 aa
AA seq
DB search
MSDPQETSDPSTFLSEIIGAPITVKLNSGVEYKGELSSVDGYMNIALEKTVEYVGGQVRN
RYGDVFIRGNNVLYISQDVM
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacccgcaggaaacttccgacccttccaccttcctcagcgagataatcggcgcc
ccaataaccgtcaagctgaactctggcgttgaatataaaggtgaactgtcgtcggtggat
gggtacatgaacattgcgctggagaagacggtggagtacgttggcggccaggtgaggaat
aggtatggggatgtgtttattcgggggaataacgtgttgtacatttctcaggatgtgatg
taa
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