KEGG   Tuber melanosporum: GSTUM_00011949001
Entry
GSTUM_00011949001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
tml  Tuber melanosporum
Pathway
tml03018  RNA degradation
tml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSTUM_00011949001
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSTUM_00011949001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00011949001
   03041 Spliceosome [BR:tml03041]
    GSTUM_00011949001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GSTUM_00011949001
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     GSTUM_00011949001
Spliceosome [BR:tml03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    GSTUM_00011949001
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 9187268
NCBI-ProteinID: XP_002842289
INRA: GSTUM_00011949001
UniProt: D5GPN7
LinkDB
AA seq 80 aa
MSDPQETSDPSTFLSEIIGAPITVKLNSGVEYKGELSSVDGYMNIALEKTVEYVGGQVRN
RYGDVFIRGNNVLYISQDVM
NT seq 243 nt   +upstreamnt  +downstreamnt
atgtcagacccgcaggaaacttccgacccttccaccttcctcagcgagataatcggcgcc
ccaataaccgtcaagctgaactctggcgttgaatataaaggtgaactgtcgtcggtggat
gggtacatgaacattgcgctggagaagacggtggagtacgttggcggccaggtgaggaat
aggtatggggatgtgtttattcgggggaataacgtgttgtacatttctcaggatgtgatg
taa

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