Phaeoacremonium minimum: UCRPA7_1707
Help
Entry
UCRPA7_1707 CDS
T03102
Name
(RefSeq) putative atp-dependent helicase nam7 protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tmn
Phaeoacremonium minimum
Pathway
tmn03013
Nucleocytoplasmic transport
tmn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tmn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
UCRPA7_1707
03015 mRNA surveillance pathway
UCRPA7_1707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmn03019
]
UCRPA7_1707
Enzymes [BR:
tmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
UCRPA7_1707
5.6.2.5 RNA 5'-3' helicase
UCRPA7_1707
Messenger RNA biogenesis [BR:
tmn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
UCRPA7_1707
mRNA cycle factors
Common to processing body (P body) and stress granule
UCRPA7_1707
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
SLFN-g3_helicase
PIF1
ATPase
SRP54
nSTAND3
AAA_22
zf-B_box_Trim66
PhoH
PWP3A-B_N
Motif
Other DBs
NCBI-GeneID:
19321883
NCBI-ProteinID:
XP_007912476
UniProt:
R8BTT2
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MDAGAFNHLGNHLISDSADTIKADGADELSNIDPDESLLYGKYGGRGGLGNARRRNDDDD
NETEVFDDDDDESLASAALGGMKRLNLRRPEEEKELPAHACAYCGIHSPASVVKCLGCNK
WFCSARGNATSSHIVNHLVRARHKEVQLHPQSALGDTVLECYNCGTKNVFLLGFIPAKSD
TVVVLLCRQPCAANTSSKDMSWDISRWQPLIEDRSFLSWLVAPPTDAEQLRARHLTPPTI
AKLEEMWKADANATVADLEKNASVDDDPHPVLLKYDDPYHYQNIFGPLVKMESDYDKKLK
EAQSEDGLVVKWDYGLNNKHLASFILPKIESGDVKLAVGDEMRLKYKGELRPPWEGVGYV
IKIPNNQSDEVTLELRKGGSDKSVPTECTHNFSADYVWKATSYDRMQVAMKTFAVDELSV
SGYIFHKLLGHEVAVAPMKTQMPKKFSAPGLPDLNNSQINAIKAVLSTPLSLIQGPPGTG
KTVTSATIIYHLAKMNNSQVLVCAPSNVAVDQLCERVHRTGLKVVRLTAKSREDVESSVS
FLALHEQVRMNDTNVELMKLAQLKQDAGELSSQDEKKFKQLTKAAEREILNNADVVCCTC
VGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAK
AGLNQSLFERLVKLSFVPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVTIQQRLRRDVDF
PWPVADTPMMFWSNLGNEEISASGTSYLNRTEASNVEKIVTRFFKAGVKPGDIGVITPYE
GQRSYIVSTMQNTGTFKKESYKEVEVASVDAFQGREKDFIVLSCVRSNDNQGIGFLSDPR
RLNVALTRAKYGVVIIGNPKVLSKHELWHHLLVHFKDRKCLVEGPLTNLQTSLLQFGRPK
TSYRPQRFAQQQQQQQQQPQQYASSSYSNGRFNGGMNGSVRDFDSGSMMSYIPDDVSSIH
SSALGGAGISSAYPHMFSNFSPEQWPGLPGVGPAGRSGAKSRGRATESIAGESVANSEFT
DASSSIIGGKGVGQGGASLGAGLQEAIGASRPTSYSQSDRLKQYVESGGRMGPGNGFGRR
YDDDEKSVSTAFASQIGGSGYD
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggatgccggcgccttcaaccatctgggcaaccatctaatctccgattctgccgacacg
atcaaggctgatggggcagatgagctctctaatatcgacccagacgaaagcttactctac
ggcaaatatggcggacgcggcggcctcggcaacgcccgcagacgcaacgacgacgatgac
aacgaaacggaggttttcgacgatgacgacgacgagagccttgcgagtgcggccctcggg
ggaatgaagaggctgaatctaagaagacccgaggaagagaaggagctgcctgctcacgct
tgcgcatactgcggaattcactcaccagcgtctgttgtcaagtgcctcggctgcaataag
tggttttgcagcgcccgtggaaacgctacgtcttctcacattgtcaatcacctggtccgc
gcgcgacacaaggaggttcaattgcatcctcaatcggctcttggcgacacagtcttggaa
tgctacaactgcggaacgaagaacgttttcctgctgggattcatccccgccaagtccgac
acagtcgtggtgctgctgtgccgacagccatgcgccgctaacacttcttctaaggacatg
agctgggatatatcgagatggcagcccctcatcgaggaccgatccttcctaagctggctc
gtggccccaccaactgatgctgagcagctccgtgctcgacatctgacacctccaaccatt
gctaagttagaagagatgtggaaggcagatgccaatgcgaccgtggcagacctcgagaag
aatgcaagcgtcgacgatgacccgcaccctgtacttctcaagtatgacgacccttaccac
tatcaaaatatttttggtcctcttgtgaagatggagtccgattacgataagaaactcaag
gaagcgcagtccgaggatggcctggttgtcaagtgggattatggtcttaacaacaagcac
ttggcgagcttcattctcccaaagattgagtccggagatgtcaaactagctgttggtgat
gagatgcgtcttaagtacaaaggcgagcttcgacctccgtgggaaggtgtcggatatgtc
atcaagatcccgaacaaccagtcagatgaagtcactttggaattgcgcaagggtggaagc
gacaagtcggttcctaccgagtgcacccataacttctcggcagattacgtttggaaggct
acgtcttacgaccgtatgcaagttgccatgaagacttttgccgtcgacgagctgagtgta
tcgggctacatcttccacaagcttcttggccacgaagttgccgttgcgccaatgaagaca
caaatgcccaagaagttcagtgcccctggcttgcctgacctgaataacagccaaatcaat
gccatcaaagctgtcctttcgacaccgctcagtctcattcagggaccacccggaaccggc
aaaacggttacatctgcgacgattatttaccatttggccaagatgaacaacagccaggtt
cttgtctgcgctccttccaacgttgctgtggaccagctttgcgaacgtgtccatcgtaca
ggtttgaaggttgttcgactcaccgcaaagtcccgtgaggatgtcgagtcgtccgtcagc
tttcttgctttgcacgagcaagtacgtatgaatgataccaatgtcgagctcatgaagctc
gctcagctcaagcaagacgctggtgaactctcatctcaagacgagaagaaattcaagcaa
ctcaccaaagcggccgagcgcgagattctcaacaatgctgatgttgtctgctgtacttgc
gttggagcgggcgatcctcgactatcaaagatgaagtttcgaaacgttctgattgatgag
tctactcagtccgccgaacctgagtgcatgattcctctcgttctaggttgcaagcaagtc
gtacttgtgggtgaccacaagcagctgggccctgttatcatgaacaagaaggctgccaag
gctggattgaaccagtctctcttcgagcgtcttgtgaagctgagcttcgtgcctattcgt
ctgaatgtccagtaccgaatgcatccatgcctttcagaatttccctcgaacatgttctat
gaaggatctcttcagaatggtgtcactattcagcaacgactccgccgtgacgtcgatttt
ccctggcccgtagcggacacacctatgatgttctggtctaatctgggcaacgaagaaatt
tccgcctccggaacatcgtatctgaaccgaacagaagcatccaatgttgagaagatcgta
acacgcttcttcaaggctggagtgaaaccaggcgacatcggcgttattactccatacgaa
ggccaacgaagctacatcgttagcaccatgcagaataccggaaccttcaagaaggagagc
tacaaggaagttgaggttgcttcagtcgatgctttccagggacgagagaaggatttcatt
gttctctcttgtgttcgatccaacgataaccagggcatcggtttcctttctgatcctcgc
cgcctcaatgttgcgcttacccgagcgaagtatggcgtggtcatcatcggaaacccgaag
gttctctccaagcacgagctgtggcaccatctcctcgttcacttcaaggaccgcaagtgc
cttgtggaaggccctctcaccaacctccagacatctttactgcaattcggtcggcccaag
acaagctatcgtcctcagcgctttgcacaacaacagcagcagcaacagcaacagccgcag
cagtatgcttctagtagctactcgaatggacgtttcaacggtggcatgaacggctctgtt
cgagacttcgactcaggctcgatgatgtcttacatccctgatgatgtctcgtctattcac
agctctgctctgggtggtgctgggatcagttccgcttaccctcacatgttctccaacttt
agtcctgaacagtggcccggactccctggggtcggcccagctggtcgctcaggagccaag
agtcgcggccgtgctactgagagcattgcaggagagagtgttgcgaactctgagtttacc
gatgccagctccagcataattggtggcaagggtgttggacaaggtggcgcgagtctcgga
gcgggattacaggaggcaatcggtgcttcacgaccaacttcctatagccaaagcgaccga
ttgaagcagtacgtcgagagtggtggacggatgggtccaggcaatggatttggtcgccgg
tatgatgacgatgagaagagcgttagcacggccttcgccagccagatcggcggctcggga
tacgactga
DBGET
integrated database retrieval system
