Phaeoacremonium minimum: UCRPA7_4039
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Entry
UCRPA7_4039 CDS
T03102
Name
(RefSeq) putative small nuclear ribonucleoprotein lsm2 protein
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
tmn
Phaeoacremonium minimum
Pathway
tmn03018
RNA degradation
tmn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
UCRPA7_4039
09123 Folding, sorting and degradation
03018 RNA degradation
UCRPA7_4039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmn03019
]
UCRPA7_4039
03041 Spliceosome [BR:
tmn03041
]
UCRPA7_4039
Messenger RNA biogenesis [BR:
tmn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
UCRPA7_4039
mRNA degradation factors
5'-3' decay
Lsm complex
UCRPA7_4039
Spliceosome [BR:
tmn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
UCRPA7_4039
Complex C
U2 snRNP components
UCRPA7_4039
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Hfq
DUF150_C
Motif
Other DBs
NCBI-GeneID:
19324449
NCBI-ProteinID:
XP_007914783
UniProt:
R8BMB7
LinkDB
All DBs
Position
Unknown
AA seq
123 aa
AA seq
DB search
MLFFSFFKTLIDHEVTVELKNDIRIRGTLKSVDQYLNIKLDDISVVDELQYPHLVGSLFA
VRDGRVPTAGPVLAPFVISSAVKNVFIRGSVVRYVHLPASAVDIPLLEDATRREAANQAS
KAK
NT seq
372 nt
NT seq
+upstream
nt +downstream
nt
atgcttttcttcagctttttcaagacgctcatcgaccatgaggtgacggtcgagctcaag
aacgatatccgcatccgcggcacgctcaagagcgtcgaccagtacctcaacatcaagctg
gacgacatcagcgtcgtcgacgagctccagtacccgcacctggtaggaagcctcttcgcc
gtgcgcgacggccgcgtgcccaccgccggccctgtcctggcgcccttcgtcatctcgagc
gccgtcaagaatgtcttcatccgaggaagcgttgtgagatatgtccatctaccagcgagt
gcagtcgacatcccgctattagaagatgccacacggagagaggctgcaaaccaagctagc
aaggcgaaatga
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