Phaeoacremonium minimum: UCRPA7_4405
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Entry
UCRPA7_4405 CDS
T03102
Name
(RefSeq) putative pre-mrna cleavage complex ii protein clp1 protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tmn
Phaeoacremonium minimum
Pathway
tmn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tmn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
UCRPA7_4405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmn03019
]
UCRPA7_4405
Enzymes [BR:
tmn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
UCRPA7_4405
Messenger RNA biogenesis [BR:
tmn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
UCRPA7_4405
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
AAA_16
SRPRB
AAA_22
FeoB_N
nSTAND3
Motif
Other DBs
NCBI-GeneID:
19324854
NCBI-ProteinID:
XP_007915121
UniProt:
R8BLA6
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MSIPGLGQIPSKPTTAAIRKHVLQPLWEWRFEVSHGSSITVRLVSGTAERDGTELALNVP
YRFTGAKSKLLTWRGAEIEVEGDDCDEYVAEHTPAETPMTSYLNLHFLLQSQRGQARVSG
AHQGPRVLVCGPATSGKTSLVRMLTALATRVGEHPMAVNTDPSEGMLSLPGTLSAGVFAT
IMDIEGEGGGWGGAPSSGPAAVPVKLPVVFCYGREKIEEDVSLYKSLISRLAGAATARMA
EDPAVRSAGMIIDTPGVNMSGKSGPEVLAHIVEEFSVNIVIVLGSARMNAELLRRFGKEK
TSLGEPISVVMLDKSEGVVERDELFMQLLQEAAVKEYFFGDAKRTLSPFTQQVDFDGVFI
YKAPEPNAYLSEDETLERVDPSPSMQHWTLAVMNASVHDPPEVIQSATVMGFVYVADVDK
DRRKLKVLAPVSARLGDRPLLWGRWPEPYINLLG
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattccaggtctagggcagataccctcaaagcccacaacagccgcgatccgcaaa
catgtcctccagccgctatgggagtggcgcttcgaggtctcgcacggctcctccatcacc
gtgcgcctcgtctccggcaccgcggagcgcgacggcaccgagctggccctcaacgtcccc
taccgcttcaccggcgccaagtcgaagctgctgacgtggcgcggcgccgagatcgaggtc
gagggcgacgactgcgacgagtacgtcgccgagcacacgcccgccgagacgccgatgacg
agctacctcaacctgcacttcctgctgcagagccagcggggccaggcgcgggtctcgggc
gcccaccagggcccgcgcgtgctggtgtgcggcccggcgacgagcggcaagaccagcctc
gtgcgcatgctcaccgcgctggcgacccgcgtgggcgagcacccgatggcggtgaacacg
gatcccagcgagggcatgctgtcgctgccggggacgctcagcgcgggcgtgtttgctacg
atcatggacattgagggcgagggcggcggctggggaggcgcgccgagcagcggacctgcc
gctgtgccggtgaagctgccggttgtgttctgctacgggcgagaaaagattgaggaggac
gtgtccctatacaagagcttgatatcgcggcttgcaggcgctgccaccgcgcgcatggcg
gaggacccagccgttcgcagcgcaggaatgatcattgatacaccgggtgtcaacatgagc
ggcaagagcggcccggaggtgctggcgcacatcgtggaggagttctcggtcaatattgtc
attgtgcttggctctgcgcggatgaatgctgagcttctgcggcggtttggcaaagaaaag
accagtctcggtgagcccatcagcgtagtgatgctggacaagtctgagggggtggtggag
agggacgagctgttcatgcagctgttgcaagaggctgctgtcaaggagtacttcttcgga
gacgccaagaggactctcagtccgttcacacagcaggttgattttgacggtgttttcata
tacaaggcgccggagcccaatgcgtatctctccgaggatgagaccctggagcgggttgat
ccttcgccttccatgcaacattggactctagctgtcatgaatgcttctgtccacgaccct
ccggaggttatacagtcggcgaccgtcatgggatttgtctatgtggcggatgtggataag
gacaggaggaaattgaaagtgctcgctcctgttagtgcgaggttgggcgatcggccacta
ctatggggcaggtggccagagccgtacattaacctattgggttag
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integrated database retrieval system
