Phaeoacremonium minimum: UCRPA7_5410
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Entry
UCRPA7_5410 CDS
T03102
Name
(RefSeq) putative atp-dependent rna helicase protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tmn
Phaeoacremonium minimum
Pathway
tmn03013
Nucleocytoplasmic transport
tmn03015
mRNA surveillance pathway
tmn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
UCRPA7_5410
09122 Translation
03013 Nucleocytoplasmic transport
UCRPA7_5410
03015 mRNA surveillance pathway
UCRPA7_5410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmn03019
]
UCRPA7_5410
03041 Spliceosome [BR:
tmn03041
]
UCRPA7_5410
Enzymes [BR:
tmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UCRPA7_5410
Messenger RNA biogenesis [BR:
tmn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
UCRPA7_5410
Spliceosome [BR:
tmn03041
]
Complex C
Other components
EJC/TREX
UCRPA7_5410
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
UCRPA7_5410
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
Motif
Other DBs
NCBI-GeneID:
19325963
NCBI-ProteinID:
XP_007916148
UniProt:
R8BI50
LinkDB
All DBs
Position
Unknown
AA seq
436 aa
AA seq
DB search
MSAEEDLIDYSDEELGTNNDAAPAANGKKADAAAAGDSVDKKGSYVGIHSTGFRDFLLKP
ELIRAITDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLTTLQQVEPIAGEC
SVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEILKNKDTHPHIIVGT
PGRLNALVRDKYLRLGSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLS
DEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYINLEEREKNRKLNELLDELQFNQVII
FVKSTIRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGID
IERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSTDQDKEVLKAIEKRFEVALP
EFPQEGIDSSTYMQVQ
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgaagaggatctcatcgactactccgacgaggagctcggcaccaacaacgat
gccgctcccgctgccaacggcaagaaggctgacgcggctgcggccggcgacagcgttgac
aagaagggttcctacgtcggcattcactccactggtttccgcgacttcctgctgaagccc
gaactcattcgtgctatcaccgactgcggtttcgagcatccatcggaggttcagcaaacc
tgtatccctcaggcccttctcggtggtgacatcatctgtcaggcgaagtctggtctcggt
aagactgctgtgttcgttctcacgacccttcagcaagtcgagcccatcgctggcgagtgc
tcggtcctggtcatgtgccacactcgtgagctggctttccagatccgcaatgagtacaac
cgtttctccaagtacatgcccgacatcaagactggagtcttctatggtggtacccctatc
cagaaggacgccgagatcctcaagaacaaggatactcatcctcacatcattgttggaact
cccggtcgtcttaacgcccttgtccgtgacaagtacctgcgcctcggcagcgttcgaatc
ttcgttctcgatgagtgcgacaagatgcttgaccagatcgatatgcgacgcgacgtccag
gagatcttccgtgcgactccgcagcagaagcaggtcatgatgttcagtgccacactgtct
gatgagatcaagcccatctgccgcaagttcatgcagaacccaactgagcactacgtcgac
gaagacaccaagttgactctgcacggtctccagcagtactacatcaacctcgaggagcgc
gagaagaaccgtaaattgaacgagcttctcgacgagcttcaattcaaccaggtcatcatc
ttcgtcaagagcactattcgtgctaccgagcttgacaagcttctccgcgagtgcaacttc
ccctcgattgcggtccattctggcgtcagccaggaggaacgtattcgccgatacaaggag
ttcaaggagttcaacaagcgaatctgcgtcgctaccgacgtcttcggacgtggtattgat
attgagcgcatcaacctggctatcaactatgacctgcctgctgatgccgactcctatctt
caccgtgtcggtcgtgccggtcgtttcggtactaagggtcttgccatctcctttgtcagc
accgatcaggacaaggaggtgctcaaggctattgagaagcgtttcgaagtcgctcttccg
gagtttccccaggaaggcattgactcaagcacttacatgcaggttcagtag
DBGET
integrated database retrieval system
