Phaeoacremonium minimum: UCRPA7_557
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Entry
UCRPA7_557 CDS
T03102
Name
(RefSeq) putative pre-mrna-splicing factor syf1 protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tmn
Phaeoacremonium minimum
Pathway
tmn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
UCRPA7_557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmn03019
]
UCRPA7_557
03041 Spliceosome [BR:
tmn03041
]
UCRPA7_557
Messenger RNA biogenesis [BR:
tmn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
UCRPA7_557
Spliceosome [BR:
tmn03041
]
Complex B
Other components
Prp19-related factors
UCRPA7_557
Complex C
UCRPA7_557
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
Mad3_BUB1_I
RPN7
TPR_15
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
19326137
NCBI-ProteinID:
XP_007911342
UniProt:
R8BWR7
LinkDB
All DBs
Position
Unknown
AA seq
824 aa
AA seq
DB search
MPATRMANGVGLGRQPDLTLVSDDDFIYEQDIQRNPGSTKPWLAYVEFKFQHGSVHEQAF
VLERACIQLPRSYKLWKIYLRFRVKHLAKLNPAVFASEYRKVNALFERALILLNKMPRIW
EMYLKFLMKQPLVTVTRHAFDRALRALPITQHNRIWALYRPFANSASGETAVKIWRRYMQ
VHPEDAEDFIELLIHVGFYTEAVHKYIDILNNPRFQSKQGKGHYELWSEMVDLLVDHAGE
IETGHETGIDVERIIRSGIDRFADQRGKLWVGLATYWIRRGSFERARDVFEEGITTVMTV
RDFTLVFDSYAEFEESIIGALMEVAQTRAEKGVVDEAADFDLDIRMMRFEHLMDRRPFLL
NDVLLRQNPNNVSEWEKRVALWGDNKQEVVQTYTDAIAAIQPKKASGAFHQLWANYAKFY
ERGGDLRNARIIMEKAVKVPFKSVAELADMWIEWAEMELRNENFDEAVRIMAKAVQAPKR
STVDYFDETLSPQQRVHKSWKLWSFYVDLVESVSSLEETKKVYERIFELRIATPQTVVNY
ANLLEENKYYEESFKIYERGLDLFSYPVAFELWNLYLTKAVDREIGIERLRDLFEQAVEG
CPPKFAKILYLMYGNLEEERGLARHAMRIYERATRAVSDEDRADMFNFYITKSASNFGLP
STRPIYERAIAALPDDEARDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNPAFWTK
WEQFEVQHGNEDTFKEMRRIKRSVQAQYNTDVNFIASQALARSQATQDIVVDDDVADAME
ALERQARAPVGFVAASDGPKGGNIPAPPVVASNPDAIDIDDMDE
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgactagaatggccaacggcgtcgggctgggacgacagccagacctcactctt
gtgtcagacgatgacttcatctacgagcaggacatccagcgaaatcccggcagcacaaaa
ccatggctcgcctatgtcgagttcaagttccagcacggctctgtccacgagcaagccttc
gtcctcgagcgcgcctgcatacagctgccgcgatcctacaagctgtggaagatctacctg
aggtttcgcgtcaagcatctcgccaagctgaatccggccgtcttcgcctctgagtaccgc
aaggtcaacgcgctctttgagcgggccttgatcctcctgaacaagatgccgcggatatgg
gaaatgtatctgaagtttctgatgaagcagcctctcgtcactgttacccgccacgcgttc
gatcgagcactccgggcgctgccgatcactcagcacaacagaatatgggctctctacagg
ccgtttgcgaattcagcatcgggcgagacggcagtcaagatctggaggcggtatatgcag
gttcatccggaggatgcagaggactttatcgagctacttattcacgttggattttataca
gaggcggtccacaagtacatcgatatactcaacaatcctcgtttccagagcaagcagggc
aagggtcactatgagctctggagcgagatggtagatttactagttgatcatgccggcgag
attgagactggtcacgagaccggtatcgacgtggagcgaatcatccggagcggcattgac
cgcttcgcagatcaaagaggaaagctgtgggttggtcttgcaacgtactggattcgacga
ggtagctttgaacgtgcgagagatgtctttgaggagggcatcacaaccgtgatgacggtc
cgagacttcactcttgtgttcgactcgtacgcggagttcgaggaatctatcatcggtgcg
ctcatggaagttgctcaaacacgggcagagaagggagtcgttgatgaggcggccgatttc
gaccttgacatccgcatgatgcgttttgagcacctaatggaccgccgccccttcctcctt
aacgatgtcttgctacggcagaatccaaacaacgtctccgagtgggagaagcgtgtcgct
ctctggggagacaacaagcaagaagttgtccagacatacaccgatgcgattgctgcgatc
cagccaaagaaagctagcggcgcattccaccaactctgggccaactatgcgaagttctac
gagcggggtggtgatctgcgcaacgcccgcatcatcatggagaaggcggttaaagtgccc
ttcaagtccgttgccgaactcgccgacatgtggattgagtgggcggaaatggagctgcgc
aacgaaaactttgatgaggccgtccgaattatggcgaaggctgtacaggcaccaaaacgt
tccacggttgactatttcgacgagacattatcccctcagcagagagttcataagagctgg
aagttatggagtttctacgttgacctggtagagagcgtcagctcattagaagagacgaag
aaggtgtatgagcgaattttcgagctcagaattgccacaccccagacagtggtcaactat
gccaacctgcttgaggagaacaaatactatgaagagtcgttcaagatctacgagcgaggt
ctcgatctgttcagttacccggtggccttcgaactatggaatctatacctgaccaaggcc
gtcgatcgggagattggcatcgagaggttacgagatctcttcgagcaggcagtggaaggc
tgcccgcccaagttcgccaagatattatatctcatgtacggcaatttagaggaggagcga
ggtctagctcgtcatgccatgcgtatctacgagagggccacccgcgctgtctcggacgag
gaccgtgccgacatgttcaacttctacattacaaaatccgcatcaaacttcggattgcca
tcaacacgtccgatctacgaaagggctattgcagccctaccagacgacgaggcccgcgat
atgtgcctgaagttcgccgatatggaaaagcgactgggcgaaatcgaccgggcccgtgcc
atctatggtcatgcctctcagttctgcgaccctcgcacgaacccggctttctggacgaag
tgggagcagttcgaagtgcagcacggaaacgaggacaccttcaaggagatgcgcaggatc
aagcgcagcgtccaggcacagtacaacaccgacgtcaactttatcgcgtctcaagctctg
gcaaggagtcaagccacgcaggacattgtggtcgacgacgacgttgcggacgccatggag
gcgttggagcgacaggctcgagcacctgtgggattcgtggcggccagcgatgggccaaag
ggcggcaatattcccgcacctcctgtggtggcctccaatcccgacgcaatcgacattgac
gatatggatgaatga
DBGET
integrated database retrieval system
