Phaeoacremonium minimum: UCRPA7_7234
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Entry
UCRPA7_7234 CDS
T03102
Name
(RefSeq) putative mrna cleavage and polyadenylation specificity factor complex subunit protein
KO
K06100
symplekin
Organism
tmn
Phaeoacremonium minimum
Pathway
tmn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tmn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
UCRPA7_7234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmn03021
]
UCRPA7_7234
03019 Messenger RNA biogenesis [BR:
tmn03019
]
UCRPA7_7234
Transcription machinery [BR:
tmn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
UCRPA7_7234
Messenger RNA biogenesis [BR:
tmn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
UCRPA7_7234
U7-dependent histone pre-mRNA processing factors
UCRPA7_7234
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
T-box
Motif
Other DBs
NCBI-GeneID:
19327974
NCBI-ProteinID:
XP_007917958
UniProt:
R8BD53
LinkDB
All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MAQQNMTPEEQLLQLRDARKLVLSDVKYYPNIVQVVLPILAPTSGPTVRRWVADFIAEAF
ASPALPSKDKETLCLLVLEHLKQTLERPKEDPYVLQSAIMAAASIYPLAMRWMPSTASRI
MNAILNFNPLKLANSPMTPKTRVLVKSMEKTTRMLLIHLSKRDPHNPFAPRIQQYVERLL
RSRSEIFDDASRKRAFAEQQAAYIEAKRQRLSADTAPAPHVQVQPLAPGPNSLAAIFTLT
GNTGLQGFDAAQMPAPMAARIAVSTLSRLDPQILTLAVTGIRDRLASLAATQAQAINPDT
APLGVEEDDDDYEPDYYAAEDTEQILNKLDGEAQEEQAPKLEAASLALGAFKLPPAPSLN
PDIAAQAGQGTVTRVFGAMQQLEDPIVKKPKAGINRLAASSYDRDSWLTVITRLATRASA
GLENVSVKDENGSALADRNRPSLSNAIREMLYNYVLEDFRKRIEVAVAWLCEEWYNDALQ
KRYSTDAPLHYDKWALKLVDGFFPYLNPQDKVLTRFLGEIPEVNASILARVTKLCRDPSM
VQLAITSLLYLVMMKPPARLLALNTVQDIWFEYEDARPMAGKVLVKWRPGFIESHSGSNE
GSIPSGSSGVAVAT
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggcccagcagaacatgaccccggaagagcagctcctgcagctgcgcgatgcgaggaag
cttgtgctgtctgatgtcaaatactaccccaacatcgtgcaagtcgtcctgcccatcctc
gctcccacgtcgggtcctaccgtacggagatgggtcgccgacttcatcgccgaagccttt
gcctcgcctgcacttccttctaaggacaaggaaacgttgtgcctgttggttttggagcat
cttaagcagacgctggagcggccgaaggaggacccttatgttctgcagagcgccatcatg
gcagctgctagtatatacccgcttgcgatgcgatggatgccctcaacagcgagtcgcatc
atgaatgccatcttgaacttcaaccctctcaaactcgccaattctccgatgacccccaag
acccgagtcctcgtcaagtctatggaaaagaccacacgaatgctcctaatacatctctca
aagcgtgaccctcataacccatttgcgcctcgtatccaacagtatgtcgagcggctacta
cgctcccgaagtgaaatcttcgacgatgccagcagaaaacgagccttcgccgaacagcaa
gcagcctacattgaggctaagcggcagcggctgagtgcggacaccgctcctgcaccccac
gtacaagtccagcctcttgccccaggcccgaacagcctcgcggcgatctttacgcttact
ggcaacactggactgcaaggctttgatgctgctcagatgcccgcgccaatggcggctcgg
atagctgtatctactttatctcgattagatccccaaatcctcaccttagctgtgaccggt
attcgtgaccgactagcatctctagctgctacacaagcgcaggctataaatccggatact
gcaccgttaggtgttgaggaggacgatgacgattatgagccggactactacgccgccgag
gatacagaacagatccttaataaactcgatggagaggctcaagaagaacaggcaccaaag
ctcgaggccgcatcacttgccttaggagcattcaagctaccgcctgcgccatcacttaat
ccggatatcgcagcgcaagctggtcagggtacagtcactcgcgtgtttggtgccatgcag
caactggaagaccctatagtaaagaagccgaaggcgggtattaaccgactggcagccagc
tcgtacgatcgagactcatggctcactgtcatcacccgtcttgcgacacgcgcgtccgcc
ggactggaaaacgtttccgtgaaggacgagaacggctctgcgcttgctgacaggaatcga
ccgagcctcagcaacgcaatccgcgaaatgctctacaattacgtcctagaagatttccga
aaacggatagaggttgctgttgcctggctttgtgaagagtggtataatgatgccctacag
aagcgatatagcactgatgctcctttgcattatgacaagtgggcattaaagctggttgat
ggtttttttccttacctcaacccccaagataaggttctcacccgattccttggcgagatc
ccagaagtgaacgcgtcgatccttgctcgggttacgaagctgtgcagggatccgtcgatg
gttcaactggcgatcacgagtcttctgtacttggtcatgatgaagccgccggcacgactc
ttggcactcaacacggtgcaggatatctggtttgagtatgaggatgctcgtcccatggct
ggaaaagtcctggtcaaatggcgccctggctttatagagtcgcatagtggctcaaacgag
ggcagtataccatcaggatctagtggtgtggctgttgcgacatga
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