Phaeoacremonium minimum: UCRPA7_8241
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Entry
UCRPA7_8241 CDS
T03102
Name
(RefSeq) putative endoribonuclease ysh1 protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tmn
Phaeoacremonium minimum
Pathway
tmn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tmn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
UCRPA7_8241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmn03021
]
UCRPA7_8241
03019 Messenger RNA biogenesis [BR:
tmn03019
]
UCRPA7_8241
Transcription machinery [BR:
tmn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
UCRPA7_8241
Messenger RNA biogenesis [BR:
tmn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
UCRPA7_8241
U7-dependent histone pre-mRNA processing factors
UCRPA7_8241
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
RMMBL
Lactamase_B
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
19329074
NCBI-ProteinID:
XP_007918949
UniProt:
R8BAA6
LinkDB
All DBs
Position
Unknown
AA seq
828 aa
AA seq
DB search
MASKRKASAMAASVTEEPVDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAY
DGLAALPFYDDFDLSTVDVLLISQGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQLIY
TEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSRE
QDRHLVSAEVPKGVKIDVLITESTYGIASHIPRLEREQALMKSVTGILNRGGRVLMPVFA
LGRAQELLLILDEYWGKHPEFQKIPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMA
EAEESGDGAGKGGPWDFKYIRSLKNLDRFEDVGGCVILASPGMLQNGVSRELLERWAPNE
KNGVIITGYSVEGTMAKQIMQEPEQIQAVMSRSMAGARRAPGAEGEKVMIPRRCSVQEFS
FAAHVDGNENREFIEEMAAPVVILVHGEQHNMMRLKSKLLSLNANKATKVKVYSPRNCEE
LRIPFKADKTAKVVGKLASIHPPTHLPTDDEQAQLITGVLVQNDFKMSLMAPEDLREYAG
LATTTITCKQRLHLSAAGVDLIKWALEGTFGSIEELPEMKKEQNGNTNGTDANGDENMEQ
EEEADEEVNNLVAAYLVMGCVSVRYRSSGEVELEWEGNLLNDGIADSVMAVLMSVESSPA
AVKRSSAQHPHDHGDHQHEYELPTRNLHVGLTPEERLERLFLFLEAQFGADNVAPIAQPK
LAPLPDDGDSKKKKKSSSADDDDGSDASMDVSDDEDEAERLLQLRQKTELERLHRLGIPV
PGVAIKVDKLAANVWLEDLEVECANKTFHDRVKAVVERAVEVTAPLWG
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaagcgcaaagcttccgcgatggcggcctcggttaccgaggagcctgtcgac
ccttctgacgagctcatgttcctttgcctaggcggtggaaatgaagtcgggcggtcatgc
catattattcaatacaagggaaagacagtcatgctcgatgctggccaacatcccgcatat
gatggcctcgctgcgcttcctttctacgacgacttcgatctgagcaccgttgatgttctc
cttatcagccagggtcgtgtcttcatgacccatccgaccaaagccatatacaaatggctc
attcaagatagcgttcgcgtgggaaacacgtcctcaaatccgacctcgcaactgatatat
acggagcaagaccacttgaacacgtttccgcagatcgaggctatcgattaccacacaaca
cacactatctcttcgatccgcatcacaccctacccggcaggtcatgtcctcggtgctgcc
atgtttctgatcgagattgccggactcaagatcttcttcacaggcgactactcacgggaa
caagaccgacatctggtctctgccgaggtgccaaagggtgtgaagatcgatgtgttgatc
accgagtcaacttacggcatcgcatcacacattccgcggctagagagagagcaagcgctt
atgaaatccgtgactggcatcttaaataggggcggtcgtgtgctcatgcccgtctttgct
cttggacgagcgcaagagcttttgttgatcttggacgagtactggggcaagcacccagag
tttcaaaagattcctatctactatgctagcaatttggcccgcaagtgtatgctggtgtat
cagacatacgtgggagccatgaatgataatatcaagcggctcttccgggagcgcatggcc
gaggccgaggagtcgggagacggtgccggaaagggaggcccgtgggatttcaagtacatc
cgctcgctcaagaacctcgatcgttttgaagatgtcggcggctgcgtcattcttgctagt
cccggtatgttgcaaaatggtgtcagcagagagcttctggagaggtgggcaccgaatgag
aagaatggagtcattatcacaggctacagcgtggagggcacaatggcaaagcaaataatg
caggagccggagcagatacaggccgtcatgtctcgaagcatggcgggagccaggcgagca
ccaggcgcagagggcgaaaaggtcatgataccgcggcggtgcagtgtccaggagttctcc
ttcgctgcccatgtagacggaaacgaaaaccgagagttcatcgaggagatggccgcaccg
gtcgtcatcctcgttcacggcgagcagcacaatatgatgcggctgaaatccaagctccta
tccctaaacgccaacaaagccacaaaagtcaaggtctacagccctcgcaattgcgaggaa
ctgcgtatccctttcaaggcggacaagactgcaaaagtcgttggcaaactcgcgtctatc
caccctccaacacacttaccaaccgacgacgagcaagctcagcttatcaccggggtcttg
gttcaaaatgacttcaaaatgtccctgatggcccctgaagatctacgtgagtacgccggt
ctggccacgacgactatcacctgcaagcaacgcctccatctcagtgccgcaggtgtcgat
ctcatcaagtgggcacttgaaggcacctttggtagtatagaggagctgcccgagatgaaa
aaggagcagaacggcaataccaacggcaccgacgccaacggcgatgagaatatggagcaa
gaggaggaggctgacgaggaggttaacaatctcgttgcggcctacctcgtcatgggctgc
gtgtcggtgcggtatcgcagcagcggcgaggtcgagctcgagtgggagggcaacctgctc
aacgatggcatcgccgactccgtgatggcagtcctaatgtccgttgagagcagccccgcg
gcggtcaagcggtcgtcggctcagcaccctcacgaccacggcgaccaccagcacgagtac
gagctgcccacgcgcaacctacacgtcggcctaacgcccgaggagcgtctcgagcgcctc
ttcctcttcctcgaggcacagttcggcgcagacaacgtcgcgcccattgcacagcccaag
ctagcgcccttgcccgatgatggggatagcaagaagaagaagaagtcatcatccgccgac
gacgacgacggctcggacgcgtcgatggacgtctcggacgatgaggacgaagccgagcgc
ctgctgcagctgcgccagaagacggagctagagcggctgcaccgcctcggaatcccggtg
cccggcgtagccatcaaggtcgacaagctggcggcgaacgtttggcttgaggatctcgag
gttgagtgcgccaataagacgttccacgaccgtgtcaaggcagtggtcgagcgcgcggtg
gaggtcacggcgccgctttggggctga
DBGET
integrated database retrieval system
