Phaeoacremonium minimum: UCRPA7_8743
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Entry
UCRPA7_8743 CDS
T03102
Name
(RefSeq) putative antiviral helicase ski2 protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tmn
Phaeoacremonium minimum
Pathway
tmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCRPA7_8743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmn03019
]
UCRPA7_8743
Enzymes [BR:
tmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UCRPA7_8743
Messenger RNA biogenesis [BR:
tmn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
UCRPA7_8743
mRNA degradation factors
3'-5' decay
Ski complex
UCRPA7_8743
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
Ski2_beta-barrel
Motif
Other DBs
NCBI-GeneID:
19329625
NCBI-ProteinID:
XP_007919445
UniProt:
R8B8Y7
LinkDB
All DBs
Position
Unknown
AA seq
1286 aa
AA seq
DB search
MADNLAEALHRLHLASNTGSAATEGENTDNILSQQAPRSSRRQDPAALKTELEKKYLSPS
TAFSTEWLNRLQQRWDCPVDYTELFKVAPTQTRTVTRFLRQGLEGRVTGYKNVTVPANSA
TAKNSTSFLRKPASRADFVRGAAGFFPFAPGGLEGIEATAALEDQVLRGTGDDGGGSANK
LERVIRLGAEGGLLEVAPGLSRGIDFSKKKSKASEDEAKAIEEELDQEPEQLPERAETDH
AALEDGTDESEAEDEDEDIDAILPVEFPALEPHGALAASSARKAGREWAHMVDIKREIPN
FDELVPNPAREWPFELDIFQKEAIYHLESGDSVFVAAHTSAGKTVVAEYAIALAAKHMTK
AIYTSPIKALSNQKFRDFRQTFEDVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIR
DVEFVIFDEVHYVNDFERGVVWEEVIIMLPDYVSLILLSATVPNTHEFASWVGRTKQKDI
YVISTPKRPVPLEHYLWANKNIYKIVDSGKKFIEKGWKEANNALQGREKTKAPEAAANTR
GGGNQRGGQRGNNQRGGQQRGGGGRGGGQQRGRGGPPRASHNPGHMGRVGRPGGFTSAAQ
DKNLWVHLVQYLKKSSLLPACIFVFSKKRVEENADALSNQDFCTSSEKSAIHMVIEKSVA
RLKPEDRALPQIIRLRELLSRGIAVHHGGLLPIVKELVEILFAQTLVKVLFATETFAMGL
NLPTRTVVFSGYRKHDGHSFRDLLPGEYTQMAGRAGRRGLDTVGSVIIVPPGGDEAPPVV
DLQKMILGEPSKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSEHATQQLLPEHEKAVK
VSEADLAKIKRDSCEICDVHMDECHQASQDYKQLTEELYKGLLNNPIGRKMFTPGRLIVY
NKDGVRTSGVLLAEGVSVKGTATTGPTVHVLEIRTQRETRDSTDLLPFVPTFRGLLTPLP
QAKKHIHVKTLHVPLADIELLTTHLTKGVLPDIFQGGDSHQKAKEKLHTICKSWTADIWD
EMDLSKIKSLQLQEIIGKRKQAEITASSSEAVSCKHFIKHFAMCHDQWLIKEHITQLRQS
LSDQNLQLLPDYEQRIEVLKDLGFIDESSRIQLKGKVACEIHSGDELVLTELILDNVLAD
YEPAEIAALLSAFVFQEKTDSVPNLTGNLQRGMGTIIEISEKVNEVQTRHQVIQSSEESN
DFVSRPRFGLMEVVYEWARGMSFKNITDLTDVLEGTIVRTITRLDETCREVKNAARIIGD
PELYQKMQTAQEMIKRDITAVASLYM
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaatctagcggaagccctgcacaggcttcacctggctagcaacacggggtca
gcggcaaccgagggtgaaaataccgacaacattctctcacagcaagctcctcgctccagc
cgcagacaggaccccgcggcgctcaagaccgagctcgagaagaaatacctatcgccctcg
actgccttctccaccgaatggctcaatcgactgcagcaacgttgggattgccctgtcgat
tacaccgagctcttcaaggtagcgccgacccaaacccggaccgtgacacgcttcttgcga
caaggccttgagggaagagtcaccggctacaaaaacgtcacagttcctgcgaatagtgct
accgccaagaactcgacatcctttctgcgcaaacctgcttcccgagctgatttcgtgcga
ggagctgccggtttcttcccgttcgcgcctggaggactggaaggtattgaggccaccgcg
gcgctagaggaccaagtactcaggggaaccggtgatgatggtggcggctcggccaacaaa
ctcgagagggtcatcagactcggtgccgagggaggcctgcttgaggtcgcgcctggtctg
tcaaggggcatagacttttccaagaagaagagcaaggctagcgaagacgaggcaaaggcg
atcgaggaagagcttgatcaggagcccgagcagctaccggaacgtgccgagaccgaccat
gcggccttggaagatgggaccgatgagtcggaggccgaagacgaggatgaagacattgat
gccatattgcccgttgagtttccagccctggagccacatggagcccttgctgcttccagt
gctaggaaagctggccgcgagtgggctcacatggtcgacattaagcgggagatacccaat
ttcgacgagctggtaccaaacccagccagggaatggccttttgagctggacatttttcaa
aaagaagccatctaccatcttgagagcggtgactctgtatttgtggcagctcacacgtct
gctggaaaaactgtcgtggccgagtatgccattgcattagctgcaaagcatatgaccaag
gcaatctacacctcgccaatcaaggcgctgagcaatcagaagttccgcgacttccggcag
actttcgaggatgttggtattcttaccggagatgttcagatcaatcctgaggccagctgt
ctaatcatgaccactgagatcttgcgaagcatgctgtacagaggggcggatcttattcga
gacgtggagtttgtcatttttgatgaggtccactatgtcaacgacttcgaacgaggagtt
gtgtgggaggaggtcatcattatgctgcccgattatgtgtccctcattttgctgtctgcg
acggtgccaaatactcacgagttcgcctcatgggttggccggacgaagcagaaggatatt
tatgtcatttcaacgccaaaacgaccagttcccttggaacattacctctgggcgaacaag
aacatctacaagatcgtagactccggaaagaagttcatagagaagggctggaaggaggcc
aacaacgcgctgcaagggagagaaaagacaaaagctccagaggcagccgccaatactcga
ggaggaggcaatcagcgtggtgggcaacgaggaaataatcaacgaggcggccaacaaaga
ggaggtggcggtcgaggtggaggacagcaaagaggcaggggcggccctcctcgcgcaagt
cataacccaggccatatgggccgtgttggtcggcctggtggctttacttcagcagcccaa
gacaagaatctgtgggtgcacttggtgcaatatctcaagaagtccagccttcttccggcc
tgtatctttgtattctcaaagaagcgtgtcgaagaaaatgccgatgccttgagcaaccag
gacttttgtaccagcagcgagaagagtgccatccacatggtcatcgagaagtcggtggca
cgactcaagccagaagatcgggctctgccacagattattaggctgagggagctcttgtcg
cgcggcatcgctgtccatcatggtggcctgcttcccattgtcaaagagctagtagagatc
ctcttcgctcagacgcttgtgaaggttctgtttgctacagagacctttgcaatgggcctg
aacttgcccactagaacggttgtgttttctgggtatagaaagcatgatggacattccttc
cgggatctcctaccaggtgaatacactcagatggccggacgagctggtcgccgtggcctt
gatactgttgggtctgttatcattgtgccgccaggcggagacgaggcgccacctgtcgta
gatctacagaagatgatattaggggagccttcgaagctccgatcacagttccgtctgaca
tacaacatgattctcaacctattgagagttgaagctctcaagattgaggaaatgatcaag
cgcagcttttcagaacatgctacacagcaattgttgcctgagcatgaaaaggctgtaaaa
gtatccgaagccgatctcgcaaaaattaaacgagattcgtgtgagatttgcgatgtccac
atggacgaatgccaccaggcttcgcaagactacaaacaactgacagaagagctctacaag
ggcttgttgaacaaccctattggccgaaagatgtttacacctggcagacttattgtttac
aacaaagacggtgtgcgaacatctggcgtcctcttggctgagggagtgagtgtcaagggg
acagcgaccactggcccgaccgtgcatgtccttgagatcaggacacagagggagactcgt
gactcgacagatctgcttccgttcgtgcctacgttccgcggacttctgactccacttcct
caagcaaagaagcatatccacgtgaagactcttcatgtacctttggcggatattgagttg
ttgacgacacacctaacgaagggtgtcctaccggacatcttccagggtggcgactctcat
cagaaagcaaaagaaaaattgcataccatttgcaaatcttggactgctgatatctgggac
gagatggacctgagcaagataaagagcctccaattacaggaaatcattggcaagcgcaaa
caagcagagattacggcctctagttccgaggctgtatcgtgcaagcatttcatcaagcac
tttgctatgtgtcatgaccaatggctcattaaggagcacatcactcagctacgccagtct
ctgtccgaccagaacctgcagcttttgcctgactacgagcaacgaatcgaggttctaaag
gacttgggtttcattgacgagagctcacgtatacagcttaaaggcaaagttgcctgcgag
atccattcaggagatgagcttgtcttgacggaactcatcctcgacaatgtcctcgctgac
tacgaacccgccgagattgctgcgctcctttcggccttcgttttccaggagaagaccgat
tcggtgcccaatttgacaggcaatctccagcgaggtatgggaacgatcatcgagatcagt
gagaaggtgaacgaggtgcagacaagacaccaggtgattcagtcctctgaggaatcgaac
gattttgtgtcgcggccacggttcggtcttatggaagtggtctacgaatgggcacgtggc
atgtcgttcaagaacatcaccgatctgactgatgtgctggagggcacaattgtgcggact
atcacccgcttggacgagacgtgccgtgaggtgaagaacgcggcaaggatcattggcgat
ccggagctgtaccagaagatgcagacggcgcaggagatgatcaagagagacatcaccgct
gttgctagtctctacatgtag
DBGET
integrated database retrieval system
