Phaeoacremonium minimum: UCRPA7_880
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Entry
UCRPA7_880 CDS
T03102
Name
(RefSeq) putative atp-dependent rna helicase dob1 protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tmn
Phaeoacremonium minimum
Pathway
tmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCRPA7_880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmn03019
]
UCRPA7_880
03041 Spliceosome [BR:
tmn03041
]
UCRPA7_880
03009 Ribosome biogenesis [BR:
tmn03009
]
UCRPA7_880
03016 Transfer RNA biogenesis [BR:
tmn03016
]
UCRPA7_880
Enzymes [BR:
tmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UCRPA7_880
Messenger RNA biogenesis [BR:
tmn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
UCRPA7_880
Spliceosome [BR:
tmn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
UCRPA7_880
Complex C
U4/U6.U5 tri-SnRNP related factors
UCRPA7_880
Ribosome biogenesis [BR:
tmn03009
]
Eukaryotic type
Pre-60S particles
Helicases
UCRPA7_880
Transfer RNA biogenesis [BR:
tmn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
UCRPA7_880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
DEAD
Helicase_C
DEXQc_Suv3
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
19329687
NCBI-ProteinID:
XP_007911662
UniProt:
R8BW95
LinkDB
All DBs
Position
Unknown
AA seq
1092 aa
AA seq
DB search
MDGDLFDVFDEQPQKAGATEAPATKSITKREKKDKSDKSKKRKADGHMKNGQSGNEEADV
DMADGEPTSLDGETHDDDSDGAQDNKRRKKEDEAEPVLTDTFETAASREVAAAAGFAAAQ
GNESLVLSHNIQHQVALPPDLDYEYVPLSEHKAPEEPARVYPFKLDPFQALSVASIERDE
SVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDFQADFGDVGLMTGD
VTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYLRDKSRGVVWEETIILLPD
KVRYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFRPTPLQNYFFPAGGEGIFLIVDEK
GVFKEKNFNTAMALIEQKKGADPSDPMARQKGKGKNKKTNKGGSSDSGSDIYKIIKMIMK
RSFHPVIVFNFSKRDCEMMALKISQMTFNNDSEKQLVREVFSSAINQLSEEDRDLPQIQH
ILPLLERGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTK
WDGVQRRPLTTGEYIQMSGRAGRRGLDDRGIVIMMVDDKLEPETAKSIVAGAQDKLNSAF
YLGYNMVLNLQRIETISPEFMLERCFYQFQNAASVPELEKELIALQQERDNMVIADESTV
KEYYGLRQQLESYTKDMVSVIQHPNYCLEFLQPGRLVHIKTPTGEDYDWGVILNFTPRRS
PKAGEPEYPPQEQYFVDVLLRLDGDSDDVVRVHPPGVMPQGIRPYLKSSSDHGRYQVVPC
LLNCVVAFSQIRVFMKGDLKTSQEMAQCGKHLEEVHRRFPDGIPILDPIENMDIRDDSFK
QLMRKIEVLESRLLSNPLHGSPLLQELWEQYATKVKLNEKIKEKKKAIAKAHSIAQLDEL
KSRKRVLRRLGFINEAEVVQMKARVACEISSTEGHELLLSELLFNRFFNELTPELCASVL
SVFIFDEKVETQDLKEELAKPFREIQQQARVIAKVSQESKLDVNEDEYVQSLKWQLMETV
YQWAQGRPFAEICKMTNAYEGSLIRLFRRLEELLRQMAQAGKVMGSEELTKKFETSLQKI
KRDIVAAQSLYL
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgacttgttcgacgtcttcgacgaacaaccgcagaaggcgggagctaccgaa
gcgccagcgacgaaatcgatcacgaagagggagaagaaggacaagtcagataagagcaag
aagcgaaaggctgatggtcatatgaagaatggacaatctggaaacgaggaagccgatgtg
gacatggctgacggcgagcccacttcacttgatggcgagacacatgacgacgactcagat
ggagcccaggacaacaagcgacgcaagaaggaagatgaagcggaacccgttctcacagat
actttcgagacagcagcatcgagagaggtagccgctgctgcaggttttgcagccgcccaa
ggcaatgagtcgcttgttctgtcgcacaatatccagcatcaggtcgcattgccacctgac
ctcgattatgaatacgtgccactgtcagaacacaaagcaccagaagagcctgctcgggtt
tacccgtttaagctcgatcccttccaggctctgtccgttgcgtctatcgaacgagatgag
agtgtactggtctccgcgcacactagtgccggcaagactgttgtcgcagaatatgccatt
gcacaatgtttgaagaggaatcaaagggttatttacacaagtcccatcaaggccttgagt
aaccagaagtatcgagatttccaagctgactttggagatgttggccttatgacaggagat
gtcacgatcaaccccacggccagctgtcttgtgatgacgacggaaattctgagatcgatg
ttgtatcgaggatccgagatcatgcgagaggtcgcgtgggttgtatttgacgaaatccat
tatctgcgagacaagtcacgaggtgtggtctgggaagagacaattattttgctccctgac
aaagtcagatatgttttcctgtcagctaccatccccaacgctttccagttcgcggaatgg
atagcgaagatacaccgacaggcatgtcacgttgtttacacagacttcagaccgacacct
ttgcaaaactacttcttccctgcaggtggagagggcatcttcctgattgtcgatgaaaag
ggtgtcttcaaggagaaaaacttcaatacagccatggctctgatcgagcagaagaaaggg
gcagacccatctgatcccatggctcgtcagaagggcaagggcaagaacaaaaagaccaat
aaggggggctcttccgactcaggttctgacatctataagatcatcaagatgatcatgaag
aggtcgtttcacccagtcatcgtcttcaatttcagcaagagagattgtgagatgatggcg
ttgaagatctctcagatgactttcaacaacgactccgaaaaacagctggtgcgtgaggta
ttcagcagcgccatcaatcagctgtccgaggaggatcgtgacttacctcaaatacaacat
attcttcctctcttggagcgaggaattggcgtgcatcattcaggattgttgcctatcttg
aaggaaacgattgaaattcttttccaagagggtctgatcaaggttctattcgcaactgag
acgttctcaatcggcttgaacatgcctgcaagaactgttgtgttcacccaagtgacgaag
tgggatggcgtacaacgtcggccccttacgactggcgaatacattcagatgtcaggacga
gctggacgtagaggtcttgatgaccgaggtattgttatcatgatggttgatgataagctt
gagccagagaccgccaagtccatcgttgctggtgcccaggacaagctgaactcggctttt
tacctgggctacaatatggtgctgaatcttcagcgtatcgagactatatcccccgaattc
atgctagagcgctgcttttaccagttccaaaatgcggccagtgttcctgaattagagaag
gagttaattgcactccaacaagagcgcgataacatggtcatcgcggacgagagcacagtc
aaggagtactatggacttcgacaacagctggaaagctacacaaaagatatggtgtccgtg
atccagcacccgaattactgtctcgagtttctgcagcccggtcgcttggttcatatcaaa
acgccgacgggcgaggattatgattggggcgtcattctgaacttcacaccgcgacgatcc
cccaaggctggtgaaccagaataccctccacaggagcaatattttgtggacgtcctgcta
aggcttgatggggacagtgatgatgtcgtccgggttcatccacctggagtcatgccacag
ggcattcgtccttacctcaagagctcttctgatcatggcagatatcaggtcgtgccttgt
ctgctaaattgcgtggtagccttcagccagattcgcgtcttcatgaaaggcgatctgaag
acatctcaggagatggcacagtgtggcaagcatttggaggaggttcacaggcgcttccct
gatggcatcccaattcttgatcctattgagaatatggacattcgtgacgattcattcaag
cagctcatgcgcaaaatcgaggtgctcgagtctcgtctgttgtcaaacccgttgcacggt
tcaccgctactgcaagagctttgggaacaatacgccacgaaggtaaagttgaacgaaaag
atcaaggagaagaagaaggcgatcgcaaaggcccacagcattgcccagttggatgagctg
aaatctcgcaagcgtgtgctacgtcgcttgggcttcatcaacgaggcagaagttgtgcaa
atgaaagctcgtgttgcttgcgagatttcttctacagaaggccacgagctgcttttgtcg
gagttgcttttcaaccgcttcttcaacgagctcacccctgaattgtgcgcgtctgttctc
agcgtattcatcttcgacgagaaggtagaaacacaagatttaaaggaggagctagctaag
ccgtttcgggagatccagcagcaagcaagagtcattgccaaggttagtcaggagagcaag
ctagatgtcaacgaggatgagtatgtgcagagcttgaaatggcaacttatggagacggtc
taccaatgggcccaaggccgcccatttgctgagatttgcaaaatgaccaatgcctatgag
ggatccctaattcgactcttccgacgactggaggaactgctccgtcaaatggcacaagct
ggaaaagtcatgggcagcgaggagctgaccaagaagttcgagacgagtctacagaagatt
aagcgagacattgttgccgctcagagtctgtatctgtaa
DBGET
integrated database retrieval system
