Tistrella mobilis: TMO_1627
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Entry
TMO_1627 CDS
T02128
Name
(GenBank) transcription-repair coupling factor superfamily II helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmo
Tistrella mobilis
Pathway
tmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TMO_1627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmo03400
]
TMO_1627
Enzymes [BR:
tmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TMO_1627
DNA repair and recombination proteins [BR:
tmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TMO_1627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFK53466
UniProt:
I3TL28
LinkDB
All DBs
Position
1805326..1808889
Genome browser
AA seq
1187 aa
AA seq
DB search
MKDATPVLIDPTLFDRPGRILLTEAPDGLVWQLAAEFAAGRPKRDLVLVMRDDARMAAAA
DALKVHLPEAEVLRLPAWDCLPYDRASPNGMIAAERMDTLTRLAGGPAADDPKAGTGSRP
RAIVVTTVNALAQRVPPRESLALARLRLEPGHRLSTERLVDYLTHNGYVRAGTVMEPGEF
AVRGGIVDLFPAGEPDPVRLDFFGDEVEAIRNFDPVTQRSNARIRRLDLKPVSEILLTEG
VIQRFRQGYRQAFGAVGTGDPLYEAISAGRRHAGMEHWLPLFHTHLEPVTAYFDRPVMVF
DHLADQAFTERRVLIEDYYEARRTGPVSIIGGEREAPYRALPPDQLYLTAKEWAEIGRSE
TLVAVQPGAAERPLEQGWQAARLAGRAARDFAPERKDEDVNLFEALKAHVDAERSAGRRV
VVCCYSAGSLDRIRTVFEDHGLKQLEQVETWADIAKAKPGALVLIVLPLDHGYVAGDLSV
LTEQDILGDRLHRKTRRKRRAENFLRDADSLTVGDLVVHVDHGIGRYEGLETITAGGAPH
DCVLVVYEGGDRLFVPVEHIDMLSRYGTADGPAPLDRLGGSQWQQRKERTKRRLKDMADA
LIAVAAERQLKGAARIERPQGLYDEFCARFPYTETEDQLHAIEDVIDDLASGRPMDRLIC
GDVGFGKTEVALRAAFIAAMSGVQVAVVAPTTLLCHQHFLGFTKRFQGFPIKIVEVSRLV
AGKRATEAKKAIADGTADIVIGTHALLSKGISFRDLGLMIIDEEQHFGVKHKERLKELKA
DVHVLTLTATPIPRTLQLALAGVKELSIIATPPVDRLALRTFTMPYDSVIVREAILREHY
RGGQTFFVCPRIEQVKEVEERLRSLVPEVKIAVAHGRLAAGELEDVMGGFYGGEYDVLLS
TSIVESGLDIPRANTIIIYRADLFGLAQLYQLRGRVGRGKLRGYAYLMLPANHGVTRTAE
KRLDVMQTLDSLGAGFTLASHDLDIRGAGNLLGEEQSGHIREVGLELFQQMLDDAIEAAK
TGGGDAPARAPVRDWSPQINLGAAVLIPETYVSDLDVRMSLYRRLADLDEGDELDAFAAE
LVDRFGPLPDEVRQLLQIVAIKRLCIAAGVEKVEAGPKGATIAFHLDQFARPEGLIQFIA
GQSGTIRLRPDHKLVVIRAWATVDDRLKGARDLIATLARIARTGKAA
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggatgcgacgcccgtgctgatcgatcccacgcttttcgaccgccccggacgcatc
ctgctgaccgaggcgcccgacggtctggtctggcagctggcggcagagttcgcagccggc
agaccaaagcgtgatctggttctggtgatgcgtgacgacgcccggatggcggccgcggcc
gacgcgctgaaagttcatctgcccgaagcggaggtgctgcgcctgccggcctgggactgc
ctgccctacgaccgggcgtcccccaacggcatgatcgccgccgagcggatggatacgctg
accaggctggccggcggcccggcggcggacgacccgaaggcggggacgggaagccggccg
cgcgcgatcgtcgtcaccacggtcaatgcgctggcccagcgcgtgccgccgcgcgagagc
ctggcactggccaggcttcggctggagccgggacaccggctgtcgacagagcgtctggtc
gactatctgacgcataacggttatgtccgcgccggcaccgtgatggagccgggtgagttt
gccgtgcgcggcggcatcgtcgacctgtttccggccggtgagccggacccggtccgcctg
gactttttcggcgacgaggtggaggcgatccggaatttcgaccccgtcacccagcggtcc
aatgcccgcatccgccggctggatctgaagccggtgagcgagatcctgctgaccgaaggg
gtgatccagcgcttccgacagggatatcgccaggctttcggcgcggtcggtaccggcgac
ccgctctacgaggcgatcagcgccgggcggcgccatgccggtatggagcactggctgccg
ctgttccacacccatctggagccggtgaccgcctatttcgaccgtccggtgatggtgttc
gatcatctggccgatcaggccttcaccgaacggcgcgtgctgatcgaggactattacgag
gcgcggcgcacggggccggtgtcgatcatcggcggcgagcgcgaggccccttaccgggcg
ctgccacccgatcagctgtacctgaccgcgaaggaatgggccgaaatcggccgcagcgaa
accctggtcgccgtgcagcccggtgctgcggagcggccgctcgagcagggctggcaggcg
gcgcggcttgccgggcgggctgcccgcgacttcgcacccgagcgcaaggacgaggacgtc
aacctcttcgaggcgctgaaggcccatgtcgatgccgagcggtcggccgggcggcgggtg
gtggtctgctgttacagcgccggctcgctcgaccgtatccggacggtctttgaagatcat
ggtctgaagcagctggagcaggtggagacctgggccgatatcgccaaggcgaagccgggc
gcgctggtgctgatcgtgctgccgctcgaccacggctatgttgcgggcgatctttcggtc
ctgaccgagcaggacattctgggcgaccgtctgcaccgcaagacccgccgcaagcgccgg
gcggagaattttctgcgcgatgccgacagcctgaccgtcggcgatctggtggttcacgtc
gatcatggcatcggccgctatgaggggcttgagaccatcaccgccggcggcgcaccgcat
gactgcgtgctggtggtctatgaaggcggcgaccggctgttcgtgccggtcgagcatatc
gacatgctgtcgcgctatggcaccgccgacgggccggcgccgctggatcggctgggcggc
agccagtggcagcagcgcaaggagcgcaccaagcggcggctgaaggacatggccgacgcg
ctgatcgcggtcgcggccgagcggcagctgaagggcgctgcccggatcgagcggccacag
gggctgtatgacgagttctgcgcccgtttcccgtacacggaaaccgaagatcagttgcac
gcgatcgaggatgtgatcgacgatctggcatcgggccggccgatggaccggctgatctgc
ggtgatgtcggcttcggcaagaccgaggtggcgctacgggcggccttcattgccgcgatg
agtggggtccaggtcgccgtggtcgcgcccacgaccctgctctgtcatcagcatttcctg
ggctttaccaagcgcttccagggatttccgatcaagatcgtcgaagtgtcgcggctggtt
gcaggcaagcgcgccaccgaggcgaagaaggcgatcgccgatggtacggccgatatcgtc
atcggcacgcatgccctgctttcaaagggcatctcgttccgcgatctcggcctgatgatc
atcgacgaggaacagcattttggcgtgaagcacaaggaacggctgaaggagctgaaggcc
gatgtccatgtgctgaccctgacggcaacaccgatcccgcgcaccctgcagctggcgctg
gccggtgtgaaggaattgtcgatcatcgccacaccgccggtcgaccggctggcgctgcgc
accttcaccatgccctatgacagcgtcatcgtccgcgaagcgatcctgcgcgagcattat
cgcggcggccagaccttcttcgtctgcccgcggatcgagcaggtcaaagaggtggaggaa
cggctgcgcagcctggtgcccgaggtcaagatcgcggtcgcccatggccggctggcggcg
ggcgagctggaagacgtgatgggcggcttctatggcggcgaatacgatgtgctgctctcc
accagcatcgtggaaagcgggctcgacattccgcgggccaatacgatcatcatctatcgt
gccgatcttttcggcctggcccagctctatcagctgcgcggacgggtggggcgcggcaag
ctgcgcggctatgcctatctgatgctgcctgccaatcacggtgtcacccgcaccgccgag
aagcggctggatgtgatgcagaccctcgacagcctgggcgctggcttcaccctggccagc
cacgatctcgacatccgtggtgccggcaatcttctgggtgaagagcagtcgggtcatatc
cgcgaagtcgggctcgaactgttccagcagatgctcgacgacgcgatcgaggcggcaaag
accggaggcggcgacgcccccgcacgggcgccggtgcgcgactggtcgccgcagatcaat
ctcggcgccgccgtgctgatccccgagacctatgtctcggatctggatgtgcgcatgtcg
ctctaccgccgtctggccgatctggacgagggcgacgagctggatgcgtttgccgccgaa
ctggtcgaccgcttcgggccgctgcccgacgaggttcgccagctgcttcagattgtcgcg
atcaagcggctgtgcatcgccgccggtgtggaaaaggtcgaggcgggacccaaaggtgcc
accatcgccttccatctcgaccagttcgcccggccggaggggctgatccagttcattgcc
ggccagtcgggcacgatccggctgcggccggatcataagctggtggtgatcagggcctgg
gcgaccgtcgacgaccggctgaagggggcgcgcgacctgatcgcgaccctggcccggatc
gcccggaccgggaaggcggcatag
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