Tenacibaculum mesophilum: F9Y86_01280
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Entry
F9Y86_01280 CDS
T06242
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tmp
Tenacibaculum mesophilum
Pathway
tmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9Y86_01280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmp03019
]
F9Y86_01280
03009 Ribosome biogenesis [BR:
tmp03009
]
F9Y86_01280
Enzymes [BR:
tmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F9Y86_01280
Messenger RNA biogenesis [BR:
tmp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F9Y86_01280
Ribosome biogenesis [BR:
tmp03009
]
Prokaryotic type
rRNA helicases
F9Y86_01280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RecG_N
Helicase_RecD
Cas3-like_C_2
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
QFS27106
LinkDB
All DBs
Position
271965..273755
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AA seq
596 aa
AA seq
DB search
MSTFLDLGLQEPINKALTDLGYEKPTVIQEKAIPQIISSTEDLKAFAQTGTGKTAAFSLP
IIELADQTSTHTQAIILSPTRELAVQIGKNIEDFSKYLPNLKVATVYGGANIEEQIRKLK
KGVQIVVGTPGRTVDLIKRRALKLGNVQWLVLDEADEMLNMGFKDELDQVLEATPNTKQT
LLFSATFPREVEDIAKNYMTNPVEVTSGQKNQGSDNVSHEYYLVNEKTRYPALKRVADLN
PDIYGIVFCRTRRETQEVANNLIRDGYNADSLHGDLSQAQRDSVMEKFRKKNIQILVATD
VAARGLDVNNLTHVINHKLPDQIENYNHRSGRTGRAGNKGVSIALVSKKEQGRLRPIERI
IKKQFVHTPIPSGKEICQNQLFHLIDKVHNTEVNTEQIEGFLPSIYEKLEDLSREELIQK
FVSLEFNTFLSYYENAPDLNNLSSRENSRGRSSSENMTRFFINLGRKDRLNPAKLIGLIN
DQNIGDKIEIGAIDILDTFSFFEIDKNFEKETLDAFAANDPDFNGRSVNIEITKNDRSGG
GRKSRRSGGGFNGKKRRSDKPTDSRKSFGRRRNENNSSRRNDNKPAAGFGRKRRRD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatttttagatttaggtttgcaagaacctatcaataaggcattaaccgattta
ggttatgaaaagccaacagtaattcaagaaaaagcaattccacaaataatttcttctaca
gaagatttaaaagcatttgcacaaacaggtacaggtaaaactgctgcctttagtttacct
attattgaacttgctgatcaaacaagcacacacacacaagcaatcatcttatctcctact
cgtgaactagcagtacaaataggaaaaaacattgaagacttttcaaagtatttacctaac
ttaaaagtagctactgtttatggtggagctaatattgaagagcaaataagaaaacttaaa
aaaggtgttcaaatagttgtaggtactcctggtagaactgtagacttaattaaaagaaga
gctttaaagcttggtaatgtacaatggttagtacttgacgaagctgatgaaatgcttaac
atgggctttaaagatgaactagaccaagttttagaagctacaccaaacaccaaacaaaca
ttattgttttctgcaacttttcctagagaagtagaagatattgcaaaaaactacatgact
aaccctgtagaagttacatctggacaaaaaaaccaaggctcagataatgtaagtcatgag
tattacttagtaaacgaaaaaactcgttatcctgctttaaaaagagtagctgatttaaac
cctgatatttacggaattgttttctgtagaacacgtagagaaacacaagaagtagctaat
aatcttattagagatggttataatgctgattctttacatggtgatttatcacaagctcaa
cgtgactctgtaatggagaagtttcgtaaaaagaacattcaaatattagtagctactgat
gttgctgctcgtggattggacgttaacaacttaacacacgttattaatcataaattacca
gatcaaattgaaaactacaatcaccgtagtggtagaactggtagagccggtaacaaagga
gtttccattgctttagtaagcaaaaaagaacaaggcaggttacgtcctattgaacgtatt
ataaaaaaacaatttgttcacactcctattccatctggcaaggaaatatgtcaaaaccaa
ttatttcatttaattgataaagttcataatactgaggtaaacacagaacaaattgaaggt
tttttaccaagtatttacgaaaaattagaagatttaagtcgtgaagagttaattcaaaag
tttgtttctttagagtttaacaccttcttatcttactacgaaaatgctcctgatttaaac
aacttatcttcaagagaaaattcaagaggacgttcttctagtgaaaacatgacccgtttc
ttcatcaatttaggaagaaaagatcgtttaaacccagccaagttaattggtttaatcaac
gatcagaacattggtgataaaattgaaattggagctatagatatattagatactttttct
ttctttgaaatcgataaaaacttcgaaaaagaaactttagatgcctttgcagcaaatgat
ccagattttaatggacgatcagtgaatatcgaaattactaaaaacgatcgtagtggtggt
ggaagaaaatcacgtagaagtggtggcggattcaatggtaaaaaacgtagaagtgataag
cctactgatagcagaaaaagttttggtagaagacgtaacgaaaacaactcctcaagaaga
aatgataacaaacctgctgcaggttttggtagaaaacgtagaagagattaa
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