Tenacibaculum mesophilum: F9Y86_05865
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Entry
F9Y86_05865 CDS
T06242
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tmp
Tenacibaculum mesophilum
Pathway
tmp03030
DNA replication
tmp03430
Mismatch repair
tmp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F9Y86_05865 (dnaE)
03430 Mismatch repair
F9Y86_05865 (dnaE)
03440 Homologous recombination
F9Y86_05865 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmp03032
]
F9Y86_05865 (dnaE)
03400 DNA repair and recombination proteins [BR:
tmp03400
]
F9Y86_05865 (dnaE)
Enzymes [BR:
tmp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F9Y86_05865 (dnaE)
DNA replication proteins [BR:
tmp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
F9Y86_05865 (dnaE)
DNA repair and recombination proteins [BR:
tmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
F9Y86_05865 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
HHH_3
Cytochrom_C_2
Motif
Other DBs
NCBI-ProteinID:
QFS27938
LinkDB
All DBs
Position
1316592..1320968
Genome browser
AA seq
1458 aa
AA seq
DB search
MYLIFDTETTGLPKSWNAPITDTDNWPRAIQIAWQLHDELGNLIEHNDFLIQPDGFNIPY
DAERIHGISTDLAIEQGIQLSEGLELFNKALQKTKFIVGQNVGFDVNIMGCEFHRLGVEN
NLTELPVLDTCTEHTAQLCQIPGGRGGKFKLPTLTELHNHLFGTGFGEAHNATADVEATT
RCFLELIRLRQYTEEQLDVPSDYFQRYTEANPNPIQVIGLKHLNLKKESEKIRKRKSSET
EEAANTISTAEGLVELEGVKFAHLHNHTQYSVLQSTIQIGNIVNAAAKDNMSAVAMTDTG
NMMAAFHFVQAVLGHNKAAEAANKEALEKGEEPTQSVLKPIVGCEFNVCEDHTNKSQKDN
GYQVVLLAKNKKGYHNLAKMSSIAFVDGFYYVPRIDKKVIEQYKEDVIVLTGNLYGEVPS
KILNVGEAQAEEALLWWKEQFGEDLYIELMRHGQEDERVVNETLLSFSKKHDIKIVATNN
TFYLDKEDANAHDILLCVKDGEKQATPKGRGRGYRYGLPNDEYYFKSTEEMKKLFADLPE
AIINIQEIVDKIEPFGLARDVLLPAFDIPEEFRDEKDLEDGGKRGENNFLRHLTYEGAKK
RYGEITDKIRERLDFELDVIAKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAY
CLWITNIDPIQYDLLFERFLNPERVSMPDIDIDFDDEGRSRVMDYVIEKYGANQVAQIIT
YGTMAAKSSVRDTARVLDLPLFEADRIAKLIPGMKLKKIFSLDEKGLKEKLRSEEIEMVN
ELKAIANGNGLEAETINKARILEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSDMYVT
QFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKARHGVELDPENFPIDDEETYALFQRG
ETVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIRRKHGDEEIQYDL
PAMEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQAAVLAKMKPKFVNQ
AKANGHDEKALEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNN
MNDIKTVSFFMEECKRMGLEVLGPDVNESYAKFSVNKDGAVRFGMAAIKGVGGSAVKAII
DERKENGHYTSIFDVAKRVDLRVANKKAFEGLVLAGGFDSFTDTHRAQYYVKDEKGQTFL
EKAIRFGNKFQENQNSSQVSLFGEASDVDLPEPLIPECETWGTMELLAREKEVVGMYISA
HPLDDFKNELKFCNASLAHFKNIAQYEGLGLSFAGIVTDVQHRVSKAGKGWAAFTMEDYN
DSFEFRIFGEDYLKFKHFLVPNSFLFIKTTIKPGWTNKEGVKGEPRVGFNEFLLLHDIMD
KMCKKLTIKIPLQEVKDNTIKELQHLFATNKGSQSLYFTIWDAEEKIELNLPSRTTKIKV
SSEFLKALDEQFINYKLN
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaattttcgataccgaaactactggattaccaaaaagctggaatgctccaata
accgataccgacaactggcctagagccatacaaattgcgtggcaattacatgatgaatta
ggaaatttaattgaacacaatgacttcttaatacaacctgacgggttcaatattccgtac
gatgcagaacgtattcatggaatttctactgatttagctatcgaacaaggaattcaattg
agtgaagggttagaactattcaacaaggcattacaaaaaacgaagtttattgttggtcaa
aatgttggttttgatgtcaacattatggggtgtgagtttcatcgtttaggtgttgaaaac
aatttaacagaattacctgttttggatacttgtaccgagcatacggcacaattatgtcaa
attcctggtggtcgtggaggaaagtttaaacttccaactcttaccgaattacacaatcat
ttattcggaacaggttttggagaagcacataacgctactgccgatgtagaagcaactaca
agatgtttcttagaattaattcgtttacgtcagtacacagaagaacagttagacgttcct
tctgattattttcaacgttatacagaagcaaatccgaacccaatacaggtaatcggactt
aagcacttaaaccttaaaaaggaaagtgaaaaaatccgtaaaagaaagtcatctgaaact
gaagaagcagctaatacaatttctaccgcagaaggattagtagaacttgaaggtgttaaa
tttgctcacttacacaaccatacacagtattctgttttacagtctaccattcaaattggt
aacatagtaaatgccgctgctaaagataatatgtctgcagttgccatgactgatactggt
aacatgatggctgctttccattttgtacaggctgtattagggcacaacaaagcagctgaa
gcggctaataaagaagccttagaaaaaggagaggaacctacacaaagtgttttaaaacct
atcgtaggttgtgaatttaatgtttgtgaagaccataccaataaaagtcaaaaagacaat
ggatatcaagtcgttttacttgctaaaaataaaaagggataccacaatttagcaaaaatg
tcttccattgctttcgtggatggtttttactatgttccaagaatcgacaaaaaagttatt
gagcaatacaaagaagatgtaattgtattaacaggaaatttatatggtgaagttcctagt
aaaatattaaatgtaggtgaagctcaagcagaagaagctttactttggtggaaagaacaa
ttcggagaagatttatatatcgaattgatgcgtcacggacaagaagatgaaagagttgtg
aacgaaactctactttcattctctaaaaagcatgatattaaaattgttgctacgaacaat
actttttacttagataaagaagacgccaatgctcacgatattttattgtgtgtaaaagat
ggtgaaaaacaagctactcctaaaggtcgaggaagaggctatcgttatggtttacctaac
gacgaatactactttaaatctactgaagagatgaaaaaactctttgctgatttacctgag
gctattattaacattcaagaaattgtagataaaatagaaccttttggtttagctcgtgat
gtattattacctgcttttgatattccagaagagtttagagatgaaaaagatcttgaagat
ggaggaaaaagaggtgaaaataattttttacgtcatttaacctatgaaggagccaaaaaa
cgttatggagaaattaccgataaaatccgagaacgtttagattttgagcttgatgtaatt
gctaaaacagggtaccctggatatttcttgattgtagaagattttattcgagaagcacga
aacatggatgtatcagtaggtccaggacgtggttctgcagctggttcggtagttgcttat
tgcttgtggattactaatatagatcctatccagtacgacttactttttgagcgtttctta
aaccctgaacgtgtatcgatgcccgatattgatatcgactttgatgatgaaggtcgtagc
cgcgtaatggattatgtaattgaaaaatatggtgctaaccaagtagcacaaattattacc
tatggtaccatggcagctaaatcatccgtccgtgatactgctcgtgtacttgacttacct
ctatttgaagccgatagaattgccaagttaattccaggaatgaaattgaaaaaaatcttt
tctttagatgagaaaggattaaaagaaaagcttcgttctgaagaaatagaaatggtaaat
gagctaaaagctattgccaatggtaatggtctggaagcagaaaccattaacaaagctaga
attttagaaggttcagttcgtaatactggaattcacgcttgtggggtaattatcactcct
gatgatattaccaaattcgtaccggtatctgttgcaaaagattccgacatgtatgttact
cagtttgacaactcggtagtagaaagtgcaggattattaaaaatggattttttggggtta
aaaacattaaccctaatcaaggatacagtaaaaattgtaaaagcacgtcatggtgtagaa
ctcgaccctgaaaatttccctattgatgatgaggaaacttatgcacttttccaacgtgga
gaaaccgtaggtatattccaatacgaatctcctgggatgcaaaagtacatgcgtgagtta
aaacctacggtttttgctgacttaattgcaatgaacgccttgtatcgtccaggtccttta
gaatatattccttcttttattagaagaaaacatggggacgaggaaattcagtacgacctt
cctgcaatggaagaatatttagcagagacctacggaattacagtatatcaggagcaagta
atgttactttcgcaaaagttagctgattttaccaaaggtgaagccgatgtacttcgtaaa
gcaatgggtaaaaagcaagctgcggtactagcgaaaatgaaacctaagtttgtgaatcaa
gcaaaggctaatggtcatgatgaaaaagccttagagaaaatttggaaggactgggaggct
ttcgcatcctatgcctttaacaaatcgcactctacttgttatgcttggattgcttatcaa
accgcttatttaaaagcccactaccctgctgaatacatggcagcagtactttccaacaac
atgaacgacattaaaacggtttcgttttttatggaagaatgtaaacgtatggggttagag
gtattgggtccagatgtaaatgaatcgtatgctaaattctctgtaaataaagatggcgct
gttcgttttggtatggcggcaattaaaggtgtaggtggttcagctgtaaaagcaattatt
gatgaacgcaaagaaaatgggcattacacttctatttttgatgtagccaaacgtgttgat
ttacgtgttgctaacaaaaaagcttttgaaggtttagtattagctggtggttttgattct
tttacagatactcacagagctcaatattatgtgaaagatgaaaaaggacaaactttttta
gaaaaggctattcgctttggaaataagtttcaagaaaatcagaattcatctcaggtatct
ttatttggagaagcttcggatgttgatttacctgaacctttaattcctgaatgtgaaact
tggggaactatggaattgttagctcgtgaaaaagaagtagtaggaatgtatatttctgca
catccacttgatgattttaaaaatgaactaaagttttgcaacgcttctctagcacatttt
aaaaacatcgctcaatatgaaggtttaggactttcttttgctggaatcgttactgatgta
cagcatcgtgtatcaaaagcaggtaaaggatgggctgcttttacaatggaagattataac
gatagttttgaatttcgaatttttggtgaagattacttaaagtttaaacactttttggtt
ccaaattcgttcctatttatcaaaactacgatcaaacctggttggactaataaagaaggt
gtgaaaggtgaacctagagttggatttaatgagtttttactattacacgatattatggat
aaaatgtgtaaaaaactcaccataaaaattcctctacaagaagtaaaagataatactata
aaagaactacaacacttgtttgctactaacaaaggctcacaaagtttgtattttaccatt
tgggatgccgaagaaaaaatagagttaaacttacctagtagaacaactaaaattaaagtg
tctagtgagtttttaaaagcattagacgaacagtttataaattataagttgaattaa
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