Tenacibaculum mesophilum: F9Y86_06255
Help
Entry
F9Y86_06255 CDS
T06242
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tmp
Tenacibaculum mesophilum
Pathway
tmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9Y86_06255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmp03019
]
F9Y86_06255
Enzymes [BR:
tmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F9Y86_06255
Messenger RNA biogenesis [BR:
tmp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F9Y86_06255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QFS28014
LinkDB
All DBs
Position
1414268..1415500
Genome browser
AA seq
410 aa
AA seq
DB search
MQFTDLQLNKSILKALTEERHHKPTLVQQKVIPLVLNKKDVIVAAQTGTGKTAAFALPII
HELSKEDDVEKRAKKIKALIVSPTRELAIQIEENFKAYSKYTNLRSTVIYGGMSTQPQKD
VLEKGVDILIATPGRFIDLHKQGSIDVRQLKTFVLDEADLMLDMGFIDDVRKIEELCPRK
KQTLLFSATMPDKVSDLAQSMLYKPEKVDISPAETTSTNIGQLLYYTPKKHKVDLCLHLL
RNTIKGRIIIFRRTKFGVDKLEKTLQKNGYKATSIHGDKSQNLRNQAIEDFKNNKANILI
ATDVAARGIDVSKVDAVINVDLPNIPETYVHRIGRTGRAGKSGIAFSLCSADETSYIKAI
QKFMDRTIKIIEAHPFPLAKPKKKKQPNTISKHKKGRKSEASKKKKKRWY
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcagtttacagacttacaactcaataaatctatcttaaaagcgcttacggaagaaagg
catcacaaaccaactttagtacaacaaaaagtaattccgttagtactcaataaaaaagat
gtgattgtagctgcacaaacaggtactggtaaaactgctgcttttgcgttacctatcatt
catgagctttctaaggaagatgatgttgaaaaaagagcaaaaaaaatcaaagctttaatt
gtaagtcctactcgagaactagctattcaaattgaagaaaattttaaagcatacagtaag
tacaccaacttaagaagtactgttatatacggtggtatgtctacacaacctcaaaaagat
gtgttagaaaaaggggtagatattttaatcgctacaccaggtcgttttatcgacttgcat
aaacaaggtagtattgatgttcgccaactgaaaacttttgttttagatgaagctgattta
atgttagatatgggctttattgacgatgtaagaaagattgaagaattatgtccgcgtaaa
aagcaaaccttactgttttctgcaacaatgcctgacaaagtaagtgacttggctcaatca
atgttgtacaagccagaaaaggtagatatttctcctgcagaaaccacttcaactaacatt
ggtcaattactgtattacactcctaaaaagcataaggtcgatttgtgtttgcacttatta
cgcaacaccataaaaggtcgtattattatatttcgtcgtaccaaatttggggttgacaaa
ttggagaaaactcttcaaaaaaacggatacaaagctaccagtatacatggtgataagtca
caaaacttacgaaaccaagctattgaggatttcaaaaacaacaaagccaacattttaatt
gctaccgatgttgctgctcgtggaattgacgttagtaaagtagatgcggttattaatgtt
gacttacctaacattcctgaaacctacgtacaccgaattggtagaactggtagagcaggt
aaatctggaatcgccttttcgctatgtagtgccgatgaaacttcgtacattaaagctatt
caaaagtttatggatagaactataaaaattatagaagcccatccattccctctagctaaa
ccaaagaagaaaaaacaacccaataccattagcaaacataaaaaaggaagaaaatcagaa
gcttctaaaaagaagaaaaaacgctggtattaa
DBGET
integrated database retrieval system
