Tenacibaculum mesophilum: F9Y86_07300
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Entry
F9Y86_07300 CDS
T06242
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tmp
Tenacibaculum mesophilum
Pathway
tmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9Y86_07300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmp03019
]
F9Y86_07300
Enzymes [BR:
tmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F9Y86_07300
Messenger RNA biogenesis [BR:
tmp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F9Y86_07300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QFS28205
LinkDB
All DBs
Position
1633065..1634378
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AA seq
437 aa
AA seq
DB search
MTFTSLGLSKALVKAVTEKGYETPSPIQEKAIPVILEGKDVLASAQTGTGKTAGFTLPIL
QNISEKKNPKYRPIKALVLTPTRELAAQVYDNVREYSTHLNIKSTAIFGGVKPSSQIATL
KKGIDILVATPGRLIDLHEQNQLSLKRVDVLVLDEADRMLDMGFLRDIKKIISFLPQKRQ
NLLFSATFSKEIKKLAQGILHNPVLVETAPENTTAEKVNQKLYKVPKSKKTELVGQLISK
GNWSQVLIFTRTKHGANRLTEKLIKRGISAAAIHGNKSQGARTKALKGFKDNSIRVLVAT
DIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLVAQEEEAYLKSIEK
LLGQKIAISELEGFDLSTIKNEITTERPKQQSRNKPTKKTLKTSSNSKKKVSTENTKKHT
PRKRNNRNRKNNNKTSR
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgacatttacatcgttaggtttatcaaaagctttagtgaaagctgtaaccgaaaaaggg
tacgaaactccctctcctattcaagaaaaagcaattcccgttattttagaaggtaaagac
gtattagcctctgcacaaactggaaccggtaaaacagcagggtttactttgcctatttta
caaaacatatcagaaaaaaagaatccgaaataccgtccaattaaagcattagtgctaact
cctacaagagaattagcagctcaagtatatgataatgtgcgcgaatatagcacgcattta
aacattaaatctaccgctatttttggtggtgtaaaaccaagttctcaaatagctactctt
aaaaaaggaatagatattttagtagctactcctggtagattaattgatttacatgaacaa
aatcaactttctttaaaacgtgtagatgttttggttttagatgaagccgacagaatgtta
gacatggggtttttacgagatattaaaaaaatcatctcttttttaccacaaaaacgtcaa
aatttattgttttcggcaactttttcaaaagaaataaaaaaattagcacaaggtatttta
cacaacccggttttagttgaaacagctcctgaaaatacaactgccgaaaaagtaaatcag
aaactatacaaagttccgaagagcaagaaaacagaattggttggtcagttaatttcaaaa
ggaaactggagccaggtattaatttttactcgaaccaagcacggtgctaataggttgact
gaaaaactaattaaacgaggaatttcagcagcagctatacatggtaacaaaagtcaagga
gcaagaaccaaagctctaaaaggctttaaagataattctatcagagtactggtagctacc
gatattgctgctcgtggattagacattccattattaccacacgttattaattttgaactt
cccaatgttcctgaagactatgtacacagaattggtagaacaggaagagctggtgctagt
ggcgaagcaatttctttggtcgcacaagaggaagaagcttatttaaaaagtattgagaag
ttattagggcaaaaaatagctatttctgaattagaaggttttgatttatctactataaaa
aatgaaataactactgagcgaccaaagcagcaatctagaaacaaaccgactaaaaaaaca
cttaaaacatcttctaattcaaagaaaaaagtgtcaacagaaaacactaaaaaacatact
cctagaaaacgaaataatcgtaataggaaaaataataacaaaacatctcgttaa
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