Tenacibaculum mesophilum: F9Y86_08415
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Entry
F9Y86_08415 CDS
T06242
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
tmp
Tenacibaculum mesophilum
Brite
KEGG Orthology (KO) [BR:
tmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmp03400
]
F9Y86_08415
Enzymes [BR:
tmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F9Y86_08415
DNA repair and recombination proteins [BR:
tmp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
F9Y86_08415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Casc1_N
Motif
Other DBs
NCBI-ProteinID:
QFS28411
LinkDB
All DBs
Position
1884671..1887427
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AA seq
918 aa
AA seq
DB search
MQSFISETLDTILQNTKSFENVVFILPSQRAGVFVKETFKKKISAGFLPEIINIGDFVEE
ISEMKKVDSVQLLFHFYTIYKKQEETPDSFDVFSSWAFTVLQDFNDIDQHLINTREIFVY
LRDIHRLRKWSVKGEFQETELMKDHFAFMEKLNKYYDTFYQFLLENNIGYQGVLYRESTK
KVTDFIHRNQQKKYFFIGFNALNAAEEFLFEQFLLNGKAEVYWDVDQTFYESQHQAGSFL
RKYKTRWKYYQQNPIKTIKEYFSEKKHIEVIGASKNITQIKYAGEILAKLPNYNNTALVL
ADETLLPITLNSLPVTVNAVNITMGYPLKDVPTTSLVFAIFHLFINQEKLEKKKENLFYH
KDVIRLVKDTTIYRLLQIDEQTNIADTLSEAIAKENNTFVGQEEVVTFLSVVSEEIKKTI
TTIFNPLVSISEFLNRIIELINLLKENTNELEKEYLFRFYTAFTQLQNLHNEFGYVQDLK
TLHQFFRQLIQSESLSFQGEPLQGLQLMGVLETRVLDFENVIITSVNEGVLPANQQQNTF
IPFDVKIEFGLPTYREKDALFSYHFFRLLQRAKNIYILYNTEHDVFGSGEKSRFVTQLEM
MRDDITEKIVSPKVVTSPVQLKEIQKDEKVLERLQELAQKGISPSALTNYLYNPIAFYKQ
KILKINELDDVEETVAANTLGTVVHDILEELYKPFEGKYLQLGDVENMQKKTKELVTFYF
SKHFKNGDLTTGKNRLIFEVANRFVENFLLKEKQLLKDENNQLKIIATEQELSSEIKVEG
IDFPIKIKGIVDRIDELNGVTRIIDYKTGMVDSTNLKVLDFEVIRDLKYHKAIQVMLYAF
LYTQHTQFNFEKRLAAGIISFKNLKSGFLQMNFSSNYRKPDNAITEERLEEFIAEIKNLL
TELYDPTINFIEPTDLPY
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcttttatctcagaaacgttagatactattttacaaaacaccaaatcgtttgaa
aatgttgtgtttatattgccttcacaaagggcaggagtttttgtaaaagaaacgtttaaa
aagaaaatttcggcaggttttttaccagagattatcaatattggtgattttgttgaagaa
atttcagaaatgaaaaaggtagactccgtccagctcctttttcatttttatacaatttat
aaaaaacaagaagaaaccccagattcttttgatgtgttttcatcatgggcatttacggtg
ttgcaagattttaatgatatcgatcagcatttgattaacacacgagaaatatttgtgtat
ttgcgagacattcatcgcttacgaaaatggtcagtaaagggagagtttcaagaaactgaa
ttaatgaaagatcattttgctttcatggaaaagttgaataaatattacgatactttttat
cagtttttacttgaaaataatatcggataccaaggggttttatatagagaatcaactaaa
aaagtaacggattttatccatagaaatcaacagaaaaaatacttttttatcgggttcaac
gcattaaatgcagcggaagagttcttgtttgaacaatttttattaaacggaaaagcagaa
gtttattgggatgttgatcaaacattttatgaaagtcagcatcaagcaggaagtttttta
aggaaatataaaacccgttggaaatactatcagcagaacccaattaaaacgattaaagaa
tatttttctgaaaagaaacatattgaggttatcggagcttcaaaaaacatcacgcagata
aaatatgcaggagagattttagctaaacttcctaattacaacaatacagcattggttttg
gcagatgaaactttgttgccaattaccttaaattcattacccgtaactgtaaatgcagtt
aacattacaatgggataccctttaaaagatgtgcctactacaagtttagtatttgctatt
ttccatctatttataaatcaagaaaagttagaaaagaagaaagaaaatcttttttatcat
aaagatgtaattcgattagtaaaagataccaccatttatcgattattacagattgatgag
caaactaatatagccgatacactttcagaagcgattgctaaagaaaacaatacgtttgtt
ggtcaagaagaggttgtaacatttttgtctgttgtaagtgaagaaataaagaaaactata
acgacaatttttaatccgttagtatcaattagtgagtttttaaacagaattatagagtta
attaacttgttgaaggaaaatactaacgagttagaaaaagagtacttattccgattttat
actgcatttactcagttacaaaacttgcataatgagtttggttatgtacaagatttaaaa
accttacatcagttttttagacaactaatacaatcggaaagtttatcatttcaaggagaa
cctttacaagggttgcagttaatgggagtattagaaacacgtgtattagattttgaaaat
gttattataacttctgtgaatgaaggagttttgcctgccaatcagcaacaaaacacgttt
attccttttgatgtaaagattgaatttgggttgccaacctacagagaaaaagatgcgcta
ttctcctaccattttttccgattgttacaacgtgctaaaaacatttacattttgtacaat
acagagcatgatgtatttggaagcggagaaaaaagtcgttttgtaacgcagttagaaatg
atgcgagacgatattaccgaaaaaatagtgagtcctaaagtagtaacatcgcctgttcaa
ttgaaagaaattcagaaggatgaaaaagttcttgaacgcttacaagaattagctcaaaaa
gggatttctccatcagcattaaccaattatttgtacaatccgattgccttttacaaacag
aaaattttaaaaattaatgaactagacgacgttgaagaaacagttgctgcaaatacgctg
ggaactgttgtgcatgatatcttagaagaattatataaaccctttgaaggaaaatatttg
caattaggagatgttgaaaatatgcagaagaaaaccaaagaactcgtaactttttatttt
tcaaaacattttaaaaacggagatttaactacaggaaagaatcgattaatttttgaagtt
gcaaatcgttttgtagagaattttttactaaaggaaaaacaattgctgaaagatgagaat
aaccaactaaaaataattgctactgagcaggaattgtcttcagaaataaaggttgaagga
attgattttccaataaaaataaaaggaattgtcgatcgaattgatgaactcaacggtgtt
actagaattattgattataaaacaggaatggttgatagcacgaacttaaaagtactcgac
tttgaagtgatacgcgatttaaaataccacaaagccattcaggtaatgttatatgcgttt
ttatatactcaacacacacaatttaattttgagaaacgattggcagcaggaattatctcc
ttcaaaaacttaaaaagtggctttttacagatgaatttctcatctaattatcgaaaacct
gataacgctattacagaagaaagattagaagaatttatagcagaaataaagaatctgtta
acggaattatacgacccgacaatcaattttattgagcctaccgatttaccttattaa
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