Tenacibaculum mesophilum: F9Y86_09620
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Entry
F9Y86_09620 CDS
T06242
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
tmp
Tenacibaculum mesophilum
Pathway
tmp02020
Two-component system
tmp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tmp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
F9Y86_09620 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F9Y86_09620 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmp03021
]
F9Y86_09620 (rpoN)
Transcription machinery [BR:
tmp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F9Y86_09620 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
SMC_ScpB
DUF2121
NES_C_h
PIN_2
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QFS28637
LinkDB
All DBs
Position
complement(2137903..2139366)
Genome browser
AA seq
487 aa
AA seq
DB search
MLKQSLHQKLLQKLSPQQIQLMKLIQLPTQAFEERLKQEIEENPALDTGKDEPENFEDSL
ANDVDYDDSGNEKIDAEDINIDEYLSDDEYPSYKTQTNNYSSDDEDKQIPYAAGTSFHQS
LKNQLNTFRIDEEERAIAEFLVGSIDDSGYIRRDIIDLVDDLAFTQNVFTTEEKVQNVLI
NVVQKLDPTGVGALNLKECLIIQLKAKSENESRALAIRILEEAFDHFVKKHYKKLLEKFN
ISEEQLKEIISEISKLNPKPGSSYAGNNKIAEQIVPDFSIKIIDGNLDLTLNSRNAPELH
VSREYNNMLKGYQDSKEKTKSQKDAVLFIKQKLDAAKWFIDAIKQRQQTLLVTMNAIMHR
QSAYFLTGDERKLKPMILKDIADEIGMDVSTVSRVASSKYVSTPYGTKLIKEFFSESMKN
DQGEDVSTREIKKILETVITEEDKRKPLTDEKLSKILKEKGYPIARRTVAKYREQLDIPV
ARLRKEI
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaacaaagtttacatcaaaaattacttcaaaaattatctccacaacaaatacag
ttgatgaagttaattcaattgcctacgcaagcttttgaagaacgtttgaaacaagaaatt
gaagaaaatcccgcattagatactggtaaagacgagcctgaaaattttgaggatagctta
gccaatgatgttgattatgacgattcgggtaatgaaaaaatagatgctgaagatataaac
attgatgagtatttaagtgatgatgaataccctagttataaaacgcaaactaacaactat
tcttcagatgatgaagacaagcaaattccttatgcagcaggtactagctttcatcaatct
ttaaaaaatcaattaaatacttttagaattgacgaagaagaacgtgctattgctgagttt
ttagtgggtagtattgatgatagcggttatatacgtagagatattatagatctagttgac
gacttagcttttacccaaaatgtttttactactgaggaaaaagtacaaaatgttttgata
aatgttgttcaaaaattagaccctactggtgtaggtgctttaaatttaaaagagtgttta
atcattcaattaaaagctaaatctgagaatgaaagcagagcattagcaataagaatttta
gaagaagcttttgatcattttgttaaaaagcactacaagaagcttctagaaaaattcaat
atttctgaagaacaattaaaggagattattagcgaaataagcaaactaaacccaaaacct
ggaagttcttacgctggaaataataaaatagcagagcaaatagttcccgatttttcaatt
aaaattattgatgggaacttagatttaactttgaactctcgtaacgctccagaattgcat
gtttctagagaatacaacaatatgttaaaagggtatcaagattctaaagagaaaactaaa
tctcaaaaagatgctgtactctttataaagcaaaaattagatgctgcaaaatggtttatt
gatgctataaaacaacgtcagcagacccttttagtaacaatgaatgcgattatgcatcgt
cagtcagcatattttttaacaggtgatgagcgtaagttaaaacctatgattttaaaagat
attgctgacgaaattggtatggacgtctcaactgtttctcgtgttgctagtagtaagtat
gtttctacaccttacggtacaaaattgattaaggaattcttttctgaatcgatgaaaaac
gaccaaggagaagatgtttcaactagagaaattaagaaaattttagaaactgtaattaca
gaggaagacaaacgaaaacctcttaccgatgaaaaattatctaaaattttaaaagaaaaa
ggataccctatcgctagaagaacagttgctaaatatcgtgaacaattagacattcctgtc
gcgaggttacgcaaagaaatttaa
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