Tenacibaculum mesophilum: F9Y86_14220
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Entry
F9Y86_14220 CDS
T06242
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tmp
Tenacibaculum mesophilum
Brite
KEGG Orthology (KO) [BR:
tmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tmp03009
]
F9Y86_14220 (rlmD)
Enzymes [BR:
tmp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
F9Y86_14220 (rlmD)
Ribosome biogenesis [BR:
tmp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
F9Y86_14220 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
MTS
Methyltransf_25
PrmA
TRM5-TYW2_MTfase
Methyltransf_32
Cons_hypoth95
Methyltransf_12
Methyltransf_15
FtsJ
N6_N4_Mtase
Methyltransf_11
UPF0020
DUF8450
Methyltransf_ANTKMT
Methyltransf_4
Ubie_methyltran
Methyltransf_18
mRNA_G-N7_MeTrfase
PCMT
Motif
Other DBs
NCBI-ProteinID:
QFS29498
LinkDB
All DBs
Position
complement(3117236..3118687)
Genome browser
AA seq
483 aa
AA seq
DB search
MPRRERNKFVKRGQIIEILIEDYAFGGKGIGRIRSEEGVFVVFVPNTLPGQLVKARVDKS
KKKYAECKLIDVLKHSEDEVAIPYQDIPGAPYIQLPIDLQHKYKQESTLSLFKRIGKVEN
IEDLFDEFIASPNVFHYRNKMEYGFSAIGYDRENKTDVDEFTLGFKRRGVWWMGDNLEKD
SGLFDKQVEDNIKNIREYCKKTGLAPWHGPKKEGFFRYFVVRKSYKTNELLFNLVTTSHD
LPKFDLKEFANYLVELFGDRVAGLLHTINDETGDRTIATSGSIKLVYGKDKIVEELLGLN
FEISMKSFFQTNPKSAEKLYTKVVDYALENKDAIDNTVVMDLFCGTGTIGQIIASKSNNT
KIVGVDIVASAIEDAKKNAERNNIEGLQFYAADVGKFLNEHPQYKNKIRTIILDPARAGI
APKTLKKIINLNADRMVYVSCNPATQARDTEELMKNGYQLKKISLVDQFPHTSHIETVVL
FEK
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgccaagaagagagcgaaataagtttgtaaaaagaggacaaatcattgaaattttaatt
gaagattatgccttcggcggaaaaggaattggaagaatacgttcagaagaaggtgttttt
gtagtttttgttcctaacactttaccaggacagttagtaaaagcacgtgtagacaaatca
aagaaaaagtatgcagagtgtaaattaattgatgttttaaaacattctgaggacgaagta
gctattccttatcaagatattcctggagcaccttatattcaattacctatagatttacaa
cacaaatacaagcaagaaagtacgttatctttatttaagcgtattggtaaagttgaaaat
attgaagatttatttgatgaatttatcgcttcccctaatgtattccactatagaaataaa
atggaatatggtttttctgccattggttacgatcgtgaaaacaaaaccgatgtagatgaa
tttaccttaggttttaaacgtcgaggtgtttggtggatgggtgataaccttgaaaaagat
tctggtttatttgacaaacaagtagaagacaacatcaaaaacattagagaatattgtaaa
aaaactggtttagctccttggcacggacctaaaaaagaaggtttctttaggtattttgta
gtaagaaagtcatacaaaaccaacgaattgttattcaacttagtaaccacttctcacgat
ttacctaaatttgatttaaaagaatttgctaattatttagtagagttatttggcgataga
gttgctggtttattacatactattaatgacgaaactggcgatagaactattgctacctca
ggaagtatcaaattggtgtacggaaaagataaaattgttgaagagttattaggtttaaat
tttgaaattagcatgaaaagcttttttcaaaccaaccctaaatctgccgaaaaactatat
accaaagtagttgattatgcgttagaaaacaaagatgcaattgacaataccgtagtgatg
gatttattctgtggaacaggaactattggacaaattattgcttcaaagtcgaataacact
aaaattgttggtgtagatattgtagcctctgctattgaagacgctaagaaaaatgcagaa
cgtaacaatattgaaggtttgcaattttatgcagctgatgtaggaaagttcttaaacgaa
cacccacaatataaaaataagataagaaccattattttagatccagctcgtgcgggtatt
gcaccaaaaacacttaagaaaatcataaacttaaatgcagatagaatggtttatgtatct
tgtaacccagcaacacaagctcgtgatacggaggaattgatgaaaaacggatatcaatta
aaaaagattagtttagtagatcaatttccacatacatcacacatagaaacggtagttcta
tttgaaaaataa
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