Thermotoga maritima Tma100: THMB_0468
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Entry
THMB_0468 CDS
T03900
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tmq
Thermotoga maritima Tma100
Pathway
tmq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tmq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THMB_0468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmq03021
]
THMB_0468
03400 DNA repair and recombination proteins [BR:
tmq03400
]
THMB_0468
Enzymes [BR:
tmq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THMB_0468
Transcription machinery [BR:
tmq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THMB_0468
DNA repair and recombination proteins [BR:
tmq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THMB_0468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DUF7269
Motif
Other DBs
NCBI-ProteinID:
AKE30123
LinkDB
All DBs
Position
478398..482189
Genome browser
AA seq
1263 aa
AA seq
DB search
MKEISCGRRTRVSFGKSREPLPIPDLVEIQKSSYRRFLEEGLLEVLKKFSPIYSQATRSD
LRKSDRGFALEFVSTRTGEPAIDPLECKAKGLTYSVPIYATARLTDMKSGEMKEEEVFLG
YIPYMTDRGTFIINGAERVVVNQIVVSPGLYFSSEYIDREEYGGYFLPSRGAWLEVILDP
YDGVLYAGLDGKKVNLFLFLKTIGYEKDEDILSLYPTYLDADDEDSLLLHVGSILLEDIY
DGGRKIAEKWDILTKDLAERILMIDDINQIKIVHPIAQNTFEKMLEVVSSSSEEGEEEEE
KTKIYGLNEVTVVDAYLEIFRRLRPEELPRINAAKRYLHDLFFNPERYDLSEVGRYKVNE
RLRNAYIRYLIEVEGEDPEEARKKVYNETSLVLKPLDIVLASRILFDYFERRYVNDFEID
SYELKNLIRIFKEEYLEKRKTAPYDLRKLVSVFRRNYGVTSDLGVFAAIRYVSNINKELP
SIPFDTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLTLINSLSKVSIQSLINIKS
IISTVNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLRRESKVFEARNVHYSQYGR
LCPIETPEGANIGFITSLAIYAKIDEYGFLMTPYRKVVNGKVTDEVVYLRANEEEEYKII
PATTPVDEEGNIIPERVVARMGEDIRLVPKEEVDFMDVSTKQPFSVSASLIPFLEHDDAS
RALMGSNMQRQAVPLLKTEAPLVGTGMEWEAAKNSGYVILAEHDGIVKEVDAARVVVHRT
DENGNLMYDDKGNPVVDEYRLLKFVRSNQDTMINQKPIVNEGDFVKKGDPIADGPATDMG
ELALGRNILVAFMPWEGYNYEDAILVSQELLEEDVFTSIHIEVYETQARETRLGPEEITA
DIPNVSKELLKNLDENGIIRVGAYVVSDYGVGSQAILVGKVTPKGEGDTTPEEKIIRSVF
GERGRDVKDTSLRLPHGVEGRVIRVDVYDQNDIAELGAGVLKLVRVYVASRKTLDIGDKL
AGRHGNKGVVSNILPKEDMPFLPDGTPVQMVLNPLGIPSRMNVGQILETHLGWLAKLTGK
WFATPVFEGAKEDEILRPLYEERKKRGLHLGDDENNPNGKVVLRDGRTGEPFDNPVVVGY
MYMLKLIHIAKEKIHARSTGPYSLIHQQPLGGKSHFGGQRLGEMEVWALEAYGAAHTLAE
MLTIKSDDIKGRNEAYKAILKNMNIPEPGVPESFRVLIKELRGLALDVRLYDENGNEIDI
DKY
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagatctcttgcggtaggaggacgagggtttctttcggcaagagccgagagccc
ctgccaattccagacctcgtggagatccagaagagttcctaccgaagattcctcgaagaa
ggtttgcttgaagtcctcaagaaattttctcccatttattcgcaggcgacccgctcagat
ttgagaaaatcagacagaggatttgctctcgagtttgtttcaaccagaactggagaacct
gccatcgatccccttgaatgtaaagcgaagggtctaacctacagtgttccgatatatgcg
acggctcgccttaccgacatgaaaagcggtgagatgaaggaagaagaagtgttccttggc
tacattccctacatgacggatcgtggaacgttcataataaacggagcagaaagggttgta
gtcaatcagatagtggtttccccagggctttacttctcgtctgagtacatagacagagaa
gaatacggcgggtactttctcccttctcgaggtgcatggctcgaagtcatcctcgatccc
tacgatggagttctttacgcgggccttgacggaaagaaggtcaaccttttcctctttctg
aaaacgatcggttacgaaaaagatgaggatatcctctccctttatcccacctatctggat
gccgacgatgaagacagtctcctgctccacgtgggctccattctgctcgaagacatctac
gatggtggcaggaagatcgctgaaaaatgggatatcctgaccaaagatctcgcggaaagg
attctgatgatagatgacataaatcagataaaaatagttcatccaatagctcaaaataca
tttgaaaagatgctggaagtggtgtcttcctcgagcgaagagggagaggaagaagaggaa
aagacaaagatttacggtttaaacgaagtcaccgttgtggacgcatatctggaaattttc
aggagattgcgacccgaagaacttccaagaataaacgcggcaaaaaggtatctgcacgac
ctcttcttcaatccggaaaggtacgatctttccgaggtgggaagatacaaagtcaacgaa
agactcagaaacgcttacatcaggtacctcatagaggttgaaggggaagatcccgaagag
gcgaggaagaaggtttacaacgaaacttctctcgttctgaaaccacttgatatagtcctc
gcttccagaattctcttcgactactttgagagaagatatgtcaacgattttgaaatagat
tcctacgagttgaagaatctgatcagaatcttcaaggaagaatacttggaaaagagaaaa
acggctccctacgatctcagaaaacttgtatctgtgttccggagaaattacggagtaaca
tctgatctcggtgtgtttgctgctatcaggtatgtttccaacataaacaaagagcttcct
tcgatacctttcgatacgaaggatcacctcgggaacaaacgtgttagaaccgttggagaa
ctcgttcagagagagttcgagagattgttcgcaagggcgcagaaggccattcaggaaaga
ctcacactcataaactctttgagtaaggtttccattcagagccttataaacataaaatcc
atcatatcaacggtcaaccagttcttcgcgatgaaccagctttctcagttcatggatcag
gtgaatcctctgtcggaactcactcacaaaagaagggtttctgctgtcggacccggtgga
ttgagaagagaatccaaagtcttcgaagcaagaaacgtgcactactctcagtacggaagg
ctgtgtcccattgaaacacccgaaggcgcgaacataggattcataacatctctggctata
tacgctaaaatcgatgaatacggatttctcatgactccttatagaaaggtagtcaatgga
aaagtaacggatgaagtggtctatctgagggccaacgaagaagaagagtacaaaatcata
cctgccaccacacccgtggatgaagagggcaacataataccagagagagtagtggctcga
atgggtgaagatatcaggcttgttcccaaagaagaagtagatttcatggatgtatcgacg
aagcaacccttcagtgtctcggcttcactcattccgttcctcgaacacgacgacgccagc
cgagccctcatgggttcgaacatgcagaggcaggccgtcccacttctgaaaacagaagca
cccctcgttggaactggaatggaatgggaagcagcgaaaaattctggttatgttattctc
gcagaacacgatggaatagtgaaagaggtcgacgctgccagagttgttgttcacagaacg
gacgagaatggaaatctcatgtacgacgataaaggcaatccagtggttgatgaatacaga
cttctaaagtttgtgagatccaaccaggatacgatgataaatcaaaaacccatcgtgaac
gaaggcgattttgtgaagaagggtgatcccatagccgacggtccggcaaccgacatggga
gaactggcacttggaaggaacatcctcgttgccttcatgccatgggaaggttacaactac
gaggacgccatccttgtgagtcaggagcttctcgaagaagacgtcttcacatcgatccac
atagaagtttatgaaactcaagcaagagaaacgaggctcggtcctgaagagatcaccgct
gatataccgaacgtgagcaaagaacttctgaaaaatctcgatgagaacggaatcatcaga
gttggagcgtacgttgtgagtgactatggagtgggttctcaggcgatactggttggaaaa
gtgacgccgaaaggcgaaggagacacaacacccgaagaaaagatcatcagatccgttttt
ggtgaacgcggaagagacgtgaaggatacatctctcaggctgcctcacggggttgaggga
agagttataagggtcgatgtttacgatcaaaacgatatagcagaactgggagcgggagtt
ttgaaactcgtcagggtgtacgttgcctcaagaaagacgctcgacatcggagacaaactc
gcaggacgccacggaaacaaaggagtcgtttcaaacatacttccaaaagaagacatgccg
ttcctacccgatggaacaccggttcagatggtactgaacccgctgggaataccttcacgt
atgaacgtcggtcagattctggaaacgcaccttggatggctcgccaaactaactggaaaa
tggttcgcaactcctgtgttcgaaggggcgaaagaagacgaaattctcagaccgctctac
gaagaaaggaagaagagaggccttcaccttggagacgacgaaaacaatccgaatggaaaa
gtggttctcagagatggaagaacgggagaacccttcgacaatcctgtggtggttggttac
atgtacatgctgaaactcatccatatagccaaagaaaagattcacgcaaggtccacagga
ccgtactctctcattcaccagcagcctctcggtggaaagtctcacttcggtggacagagg
cttggagaaatggaggtctgggctctggaggcctatggagctgctcatactcttgcggag
atgctcaccataaaatccgacgacataaaaggaagaaacgaagcctataaagccatactg
aagaacatgaatatacctgaacctggtgttcccgaaagctttagggttctcatcaaagaa
ctcagaggtctcgcgctcgatgtgagactctacgatgagaacggtaacgagatagatatc
gacaagtactga
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integrated database retrieval system
