Tremella mesenterica: TREMEDRAFT_12890
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Entry
TREMEDRAFT_12890 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
tms
Tremella mesenterica
Pathway
tms03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TREMEDRAFT_12890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tms03021
]
TREMEDRAFT_12890
Transcription machinery [BR:
tms03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
TREMEDRAFT_12890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AftA_C
Motif
Other DBs
NCBI-GeneID:
18491055
NCBI-ProteinID:
XP_007000404
JGI:
Treme1_12890
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
PRPSDPSKIVEIKLYSTAPDDTTRFNLMKFNYAREFDPLTLPDPLLTRKQPGERIKPTIA
LDDNGNVIGKYVYDNNGKLLLGADGRPIIEHIETMDVNLVGQAKGVQEGSGSRRKFRNTA
REVFHQDVETVKLKREEAQPWVLEAKTPREKPPIPEHWVGRMVEGSTLPMVLFVNEGKND
GFSVVPLGRTYRFNPERPFKVLDSDEANKLFEFQAKNKFVDRWSQRPDGASSVAQIKPEP
GMDNRAARIEQRVLQKHGESSTSRVKVERYEDDYLREGRAVQLGVEGGIDEELDFDANEH
FQDDDDVNDFHRNDEEEEEAKLQEEKLKKEFRMANANVGDKPQIDSGSDSDDLFGDKEQK
LTQEGKRVRKMMRKRGEKGDEELWRSSSSSESDSESDSVKTEKKETDDKDTDKEKGLETS
AAEKEVRSRANSRGPNNGRPTASPSRRSHTPAVTSQPGSGAALVAQRATGQDTPHRSRGN
SPISRSRTPTDARSASPTPRGVSPSLSGAVSPSKTRPTQKSRDSSSKSQSPNLESASAQG
SSSALQPGTGTSNKRKTSPTPPFPSDNRLNKKKKRLSATPTPGPEVEPFEGMITPQEVVA
WFKEVGKSHTGVAMNDLVLGFKKRILASGDKKDEQQKMFLSSVRSVTEQGDGKMMRLRPE
Y
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
cctcgtccctctgacccatcaaagatagtagagatcaaactttactctaccgcccctgat
gataccacccgtttcaacctcatgaaattcaactatgctcgtgaattcgacccattgaca
cttcccgacccactcttgactcgaaaacaacctggggaaaggataaaacctaccatcgct
ttggatgacaatgggaatgtcatcggcaagtatgtgtatgacaacaatgggaaacttcta
cttggagcagatggacgaccaatcatcgagcacatagagacgatggatgtgaaccttgtg
ggacaagcaaaaggtgtgcaagagggatcaggatccaggagaaagtttcgtaatactgct
agagaggtgtttcatcaagatgttgaaactgtcaagttaaagagggaagaggcacagccg
tgggtcctcgaagctaagacacccagagagaaacctcctattccagaacattgggtgggt
agaatggtggaggggtcgacgcttccgatggttctgttcgtgaacgagggtaaaaacgac
ggtttcagtgtcgtccctttaggaagaacatataggtttaatccggaacgtccgttcaaa
gtacttgattcagacgaggcgaacaaactgttcgaattccaggccaaaaataaatttgtt
gaccggtggagtcaaagacctgacggagcatcttccgtcgctcaaatcaaacctgaacct
ggaatggataatcgggccgcgagaatagagcagcgtgttctacaaaaacatggggaatct
agcacatctcgtgttaaagtggaacgttacgaggatgattatttgagggaaggacgagca
gttcaactgggcgtggaaggtggtatagatgaagaacttgattttgacgccaacgagcat
tttcaagatgacgacgatgtgaatgatttccatcgtaatgacgaagaagaagaagaggcc
aagcttcaagaagaaaaactcaagaaagaattcagaatggccaatgcgaacgttggcgat
aaacctcaaattgattccggttcagactccgatgacttgtttggagataaggaacaaaaa
ttgactcaagagggtaaacgagttcgaaagatgatgcgtaaacgtggtgagaagggggat
gaagagttatggagatcttcttcatcttccgagagtgatagcgagtcggattctgtgaaa
acggaaaagaaagagaccgacgacaaagacacagataaggaaaaaggactggaaacttct
gccgctgagaaagaagtcagatctagggcgaattccagaggtccaaacaatggtcgtccc
accgcttctccctctcgtcgctctcataccccagctgtgacgtctcaacctgggtctggt
gccgctctggtggctcaacgtgctacgggtcaagatactccccatcggtctcgcggaaac
agtcccatttcacgatcacggacccctacggatgctcgcagtgcgtctcccactcctcga
ggtgtctctcccagtctttctggggcagtgtcaccttcgaagacccgaccaactcagaag
agccgtgattccagctcaaaatcacaatctcccaatctcgaatccgccagtgcgcaaggg
tcatcgtcagccctccaacctggaacgggaacttcgaataaacggaaaacctcaccgaca
cctcctttccccagcgacaaccgattgaacaaaaagaaaaagcgattgtcagccactccc
acacctggcccggaagtggagccgttcgaaggcatgatcactcctcaagaggtggtcgcc
tggttcaaagaggttggtaaatctcacacaggagtagcaatgaacgatcttgttttaggt
ttcaaaaaacgtatattggcgagtggggataagaaggatgaacagcagaaaatgtttttg
agtagcgtgagaagcgtcacagaacaaggggacggtaagatgatgcgtctgagaccagag
tat
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