Tremella mesenterica: TREMEDRAFT_13756
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Entry
TREMEDRAFT_13756 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tms
Tremella mesenterica
Pathway
tms03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TREMEDRAFT_13756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tms03021
]
TREMEDRAFT_13756
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_13756
Transcription machinery [BR:
tms03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TREMEDRAFT_13756
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
TREMEDRAFT_13756
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
zf_UBZ
DUF7340
Motif
Other DBs
NCBI-GeneID:
18491070
NCBI-ProteinID:
XP_007003161
JGI:
Treme1_13756
LinkDB
All DBs
Position
Unknown
AA seq
507 aa
AA seq
DB search
MSYGAYPHYANPPPPPPPFYPPPPVVDPFRAYYADRLRELTFNSRPIIQDLSMLASAQRD
AGDWTKMQAVVEEIENAVLRAPPQGKLPLLYLLDSISKNCGAPYTTDLLPPIIPRLYMRT
YREVDGVTKNKMEEMVTLWRSSGPGRTDLYGLAVRDAVERDIFGSAGWQPPSRQYPTQHA
VQQLLAQTMEAPPPPTTPPRPPIPPPIAQPVNTWTPPAPIQPAPGIHTPLPPFAPTLLPP
NPAYPPRPQSSFVPEPRSSTPMIAPAPLPATTPSIPNFTMPLDVANILKNLNTAALLSKP
QTPLLEVKPRNVLDEYEDLILSMKDVNLQNLDLTVSLPDREIPLDHLPERCKQCGLRFPG
IGTQMQEHLDWHFRRNRKERETEGRGAHRRWLPRAEEWVSDLMTNNAVASGSGQKGKGKL
TAEKMAQLKKRWVAVPSDPALAAKPCPICKETFKGEWSEEEEEWVFKNALNVNGNIYHAT
CRAEQMSAVVAARLMDGGRRTGSKSPR
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacggcgcctatcctcactatgccaaccctcccccgccaccgccaccgttttac
cctcctccacccgtcgtcgacccattcagagcgtattatgcagatcgactgagagagctc
acattcaactctcgacctataatccaggatttatctatgctcgcttccgcccaaagggat
gctggtgattggacaaagatgcaagcggtggtggaagagatagaaaatgccgtcttacgt
gcaccacctcaagggaaattacccttgctatatcttctagattcgatatcaaagaattgt
ggagcaccatatacaaccgatttgttacctcctatcataccccgactttacatgcgtacg
tatcgagaggtagatggtgtgacgaagaataaaatggaagagatggtgactttgtggaga
tcttcaggaccgggaagaacggatttgtatggacttgctgttcgagatgccgtcgaaagg
gatattttcggatcagcaggatggcaaccaccttcaagacaatatcccacgcaacatgcg
gtccaacaacttttggcgcaaacgatggaagcaccgccaccccccaccacaccacctcga
ccacccattccgccaccaatagcacaaccagtcaatacttggacacctcctgctcccata
caacccgctccaggtattcacacacctctaccacctttcgcgcctaccctacttcctccc
aatccagcgtatccccctcgaccacaatcgtcttttgttcccgaacctcgctcctcgacc
ccgatgatcgcgcccgcccctcttcccgccaccacacccagtatacctaattttaccatg
ccgctagacgttgccaacattctcaaaaacctcaacactgccgctcttctcagtaaacct
caaactccgcttttagaggtcaaacctcgaaatgtgttggacgagtatgaagatcttata
ttatcgatgaaagatgtcaatttgcaaaatctcgatttgaccgtatccctccctgaccgt
gaaataccccttgatcatctgccagaacgatgcaaacaatgtggcctccgtttcccagga
ataggtacacaaatgcaggaacatctcgattggcatttccgtcgaaaccgaaaagaacgc
gagacggagggaaggggtgctcatcgacgttggttgccaagagctgaagaatgggtatca
gatctaatgaccaacaatgctgtcgcttctggctcgggtcaaaagggcaaggggaagttg
acagcggagaaaatggcacagttgaagaaaagatgggttgcagtaccgagtgatccggca
ctggccgcgaaaccctgtccaatatgcaaagagacttttaaaggcgaatggagtgaagaa
gaggaagaatgggtttttaagaatgcactgaatgttaatggtaatatttatcacgctaca
tgccgagccgaacaaatgtcagctgtagtggctgctcgtttgatggacggtggtcgtaga
acaggaagtaaaagtcctcga
DBGET
integrated database retrieval system
