KEGG   Tremella mesenterica: TREMEDRAFT_24108
Entry
TREMEDRAFT_24108  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
tms  Tremella mesenterica
Pathway
tms03018  RNA degradation
tms03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TREMEDRAFT_24108
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TREMEDRAFT_24108
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_24108
   03041 Spliceosome [BR:tms03041]
    TREMEDRAFT_24108
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TREMEDRAFT_24108
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TREMEDRAFT_24108
Spliceosome [BR:tms03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    TREMEDRAFT_24108
SSDB
Motif
Pfam: LSM DUF6897 NAD_Gly3P_dh_N
Other DBs
NCBI-GeneID: 18491337
NCBI-ProteinID: XP_007000475
JGI: Treme1_24108
LinkDB
Position
Unknown
AA seq 79 aa
EKKKRESILNLANYVDKSIRVKFMGAREVTGTLKGFDQLMNLVMDDVVEEFENGMPSRSL
GLVVLRGPNITLILPTDGS
NT seq 237 nt   +upstreamnt  +downstreamnt
gagaaaaagaagagagaatcaattttgaatctggcgaattatgttgacaagtccatccgg
gtcaaattcatgggtgcgagggaggtgacaggcactttgaaaggtttcgatcaacttatg
aaccttgtaatggacgatgtagttgaagaattcgaaaacggtatgccttctcgatcatta
ggtttggtagttcttcgaggacctaatataacacttatattacctaccgatggatct

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