Tremella mesenterica: TREMEDRAFT_24586
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Entry
TREMEDRAFT_24586 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
tms
Tremella mesenterica
Pathway
tms03018
RNA degradation
tms03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TREMEDRAFT_24586
09123 Folding, sorting and degradation
03018 RNA degradation
TREMEDRAFT_24586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_24586
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_24586
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TREMEDRAFT_24586
mRNA degradation factors
5'-3' decay
Lsm complex
TREMEDRAFT_24586
Spliceosome [BR:
tms03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
TREMEDRAFT_24586
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Hfq
Motif
Other DBs
NCBI-GeneID:
18491385
NCBI-ProteinID:
XP_007000519
JGI:
Treme1_24586
LinkDB
All DBs
Position
Unknown
AA seq
104 aa
AA seq
DB search
LPLTLLNAAQGKPMLVELKNGVTFNGHLVECDNFMNVTLREVYQTSADGERFWKMKEVFI
KGNIIKYFRIADAILDSAFEQQEKNRAAAKTRGQSARGMSSLFS
NT seq
315 nt
NT seq
+upstream
nt +downstream
nt
ttaccattaacacttctcaatgctgctcaaggcaaacccatgctggtggagttgaaaaac
ggagttacattcaacggtcacttagtcgaatgtgataatttcatgaatgtcacccttaga
gaagtataccagacttcagccgatggtgagagattttggaagatgaaagaagttttcata
aaaggcaatataataaaatatttccgaatagcggatgctatacttgattctgctttcgaa
caacaagagaagaacagggcggcggcgaaaactcgtggacagagtgcgaggggtatgtcc
tctttgttttcctaa
DBGET
integrated database retrieval system
