KEGG   Tremella mesenterica: TREMEDRAFT_24691
Entry
TREMEDRAFT_24691  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K03016  DNA-directed RNA polymerases I, II, and III subunit RPABC3
Organism
tms  Tremella mesenterica
Pathway
tms03020  RNA polymerase
tms03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TREMEDRAFT_24691
  09124 Replication and repair
   03420 Nucleotide excision repair
    TREMEDRAFT_24691
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tms03021]
    TREMEDRAFT_24691
   03400 DNA repair and recombination proteins [BR:tms03400]
    TREMEDRAFT_24691
Transcription machinery [BR:tms03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     TREMEDRAFT_24691
  RNA polymerase III system
   RNA polymerase III
     TREMEDRAFT_24691
  RNA polymerase I system
   RNA polymerase I
     TREMEDRAFT_24691
DNA repair and recombination proteins [BR:tms03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TREMEDRAFT_24691
SSDB
Motif
Pfam: RNA_pol_Rpb8
Other DBs
NCBI-GeneID: 18491396
NCBI-ProteinID: XP_007000530
JGI: Treme1_24691
LinkDB
Position
Unknown
AA seq 156 aa
MAETNNILFEDRFIVDEVDKGGKKFDRVSRIEATSQNSRMSLVLDIANELYPLNPRETFT
LALARSLLSEGEQIDGDADLDGEENGGGGGGKKVKRELWRGGDQGLADDYEYVMYGKVTG
ITAYISFGGLLMALRGPYRHLTGITVGQNVYLLIRK
NT seq 471 nt   +upstreamnt  +downstreamnt
atggcagaaaccaataacatcttattcgaagatcggttcattgtggatgaagtagataaa
ggtggtaagaaattcgatagagtatcaagaatagaagcaacatctcaaaattcaagaatg
tctttagtactcgatatagcgaatgaactttatcctttaaatcctagagaaactttcaca
ttagctttagctagatcattattgagtgaaggtgaacaaattgatggtgatgcggattta
gatggggaagaaaatggtggtggtggtggtgggaaaaaagtgaaaagagaattatggaga
ggtggtgatcaaggtttggcagatgattatgaatatgtcatgtatggtaaagttactggg
ataacggcctatatatccttcggtggtctcttaatggcactcagaggtccatatagacat
ttgacaggaataactgtcggtcaaaatgtttatcttctcatacgaaaatga

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