KEGG   Tremella mesenterica: TREMEDRAFT_24724
Entry
TREMEDRAFT_24724  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K10609  cullin 4
Organism
tms  Tremella mesenterica
Pathway
tms03420  Nucleotide excision repair
tms04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    TREMEDRAFT_24724
  09124 Replication and repair
   03420 Nucleotide excision repair
    TREMEDRAFT_24724
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tms04121]
    TREMEDRAFT_24724
   03400 DNA repair and recombination proteins [BR:tms03400]
    TREMEDRAFT_24724
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tms04147]
    TREMEDRAFT_24724
Ubiquitin system [BR:tms04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     TREMEDRAFT_24724
DNA repair and recombination proteins [BR:tms03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      TREMEDRAFT_24724
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      TREMEDRAFT_24724
Exosome [BR:tms04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   TREMEDRAFT_24724
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 18491401
NCBI-ProteinID: XP_007000535
JGI: Treme1_24724
LinkDB
Position
Unknown
AA seq 435 aa
LKTLISDPANDSHMIESTLVLKRFADKAVTSLFPASTGSQLSSPDERDAFLVQHRQRIEL
EDAVLQGLKTGISSRQNAPAEWIAKHLDAVMRRGQGSSTEAEFSALLDEIIALVSYTPDK
DVFKAFYSTQLAKRLLLNKSASDDMERDMILRLQKEMGEEFTSGDVMMKDLQLSESLVKS
YQSAQAKNPEHFQGSGDFTANVLTESAWPAYPLLKDGWSFQLTPGLQRSIDAFTQWYSTQ
HQNRQLSWRYQLATVTMTARFDSGRYEITLSLFQAVVLLQFNEDDSLSFKELHERTGIET
KELARTLQSLSLGRKGTRVLLKKPTGKDVNPQDAFVWNKSFTNDRIKFKINQIQQDMSAE
ETKKTNEQVIVDRVSVLEATIVRIMKARKKMTLQLLIDAVVTDVNKRFPPDIKELKKRVE
SLIEREVSDTAFPML
NT seq 1308 nt   +upstreamnt  +downstreamnt
ttgaaaaccttaatatctgatcctgccaatgactcacatatgatcgaaagcacactcgtg
ttgaaacgcttcgccgacaaagccgttactagtctttttccagcatccactggctcgcag
ctatcttcgcctgacgaacgcgatgctttccttgttcagcatcgccaacgaatcgagctg
gaagacgccgtccttcaaggtctcaaaacgggaattagctctcgacaaaatgcaccagcc
gagtggatcgccaaacacttggatgctgtcatgcgtcgtggtcaaggatcgagcacggag
gccgagttctcagcgttgttggatgagatcatcgctctcgttagttacacaccggacaaa
gatgtgttcaaggctttctactcgacgcaattggcaaagcggctcttgctcaacaagagc
gccagcgatgatatggaaagagacatgatcttacgactgcaaaaagaaatgggagaggag
ttcaccagtggagatgtgatgatgaaggacctgcagttatcagagtctcttgtcaaatca
tatcaatcagctcaggcaaagaacccggagcatttccagggctcgggcgacttcactgcc
aatgtccttactgagtccgcctggcctgcatatcctcttctcaaagacggatggagcttt
caactcacacccggacttcaaaggtcgatcgacgccttcacccagtggtactccacccaa
catcagaatcgccagttgtcttggcgatatcagcttgcgacagtcaccatgaccgctcga
ttcgatagtggacgatatgagatcactctctccctctttcaagcagtcgtcttgcttcaa
ttcaatgaagacgatagtctcagcttcaaggaacttcatgaacggaccggtatcgagaca
aaagagctggccaggacacttcaatccctttctttaggtagaaaagggacaagagtgttg
ttgaaaaagccaacgggaaaggatgtgaatccccaagatgcgttcgtttggaacaaatcg
ttcaccaacgataggatcaagttcaaaatcaatcagatccaacaggacatgtcggccgaa
gagacgaaaaagacgaacgaacaagtcatcgtggaccgagtgtcagtgctggaagctacg
attgtgcgaataatgaaagctcggaagaagatgaccttgcaattactcattgacgcggta
gtgacagatgtcaataaacgtttccctccagacatcaaggagctgaagaagcgtgtggag
agtttgatagagcgcgaggtgagtgatacagctttccctatgctctag

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