Tremella mesenterica: TREMEDRAFT_27480
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Entry
TREMEDRAFT_27480 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_27480
03009 Ribosome biogenesis [BR:
tms03009
]
TREMEDRAFT_27480
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TREMEDRAFT_27480
Spliceosome [BR:
tms03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
TREMEDRAFT_27480
Ribosome biogenesis [BR:
tms03009
]
Eukaryotic type
Pre-60S particles
Helicases
TREMEDRAFT_27480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Nop14
Motif
Other DBs
NCBI-GeneID:
18491766
NCBI-ProteinID:
XP_007002356
JGI:
Treme1_27480
LinkDB
All DBs
Position
Unknown
AA seq
786 aa
AA seq
DB search
MVQAQDFIGTIDSDDEVFTSSVQPVRGKKQSHQRATSQPPVEELKLDPSLKFDFHDEAEG
SWGVDEVKEVVSGKAGLGVDDIIARRLGKPVLSHQERKRRREEEIDEDDISSEAGDEEMS
DDEDEDEEDDEEEEEEEEGEAATDDDVEMSSGSEDDEGEVSEGGQDSHNADNDEDSDSSE
KDTAAEVARKNAFFAADPTTDPTLPTSFSTMNLSRPLLRALTSLNLITPTPIQARAIPLA
LLGRDILGSAVTGSGKTAAFMVPILERLTYRERGRGGQACRVLILCPTRELAVQCEEFGK
KLSTQGGLNIRFALLVGGLSLNAQAQNLRTLPDILIATPGRLIDHLTNTPSFTLSALDVL
VIDEADRMLEAGFTDELNEIVRSCPRGRQTMLFSATMTDSVDELVKLSLDKPIRLFVDPK
RNTAIGLTQEFVRIKSDDTRSPSLLALCKRTVRERCIIFFRSKALAHQMRVVFGLCGLKA
AELHGNLSQEQRLHALEEFKLGKVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHR
VGRTARAGRKGRSITLVGEADRKLLKAVIKQSEADEIRHRIIPSEAVTAMSKTLDEMKDE
IQEVLKEEKEEKALRQADMEITKGENMIAHEEEIFSRPARTWFQSEKEKLASKNAGKAAY
TSGFPSDPKTEKEEKTKLKRGIYDGLSRKTKRRRIAMKEDEGDKTASTAAIRAFKKNIRP
SKITEPIRAPMSKKGKSGKKGKKASAFDEDSGGRHEGMRAKPVKVSLNKMKGGKGGKGKV
KGKGRR
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaagctcaagattttatcggtaccatagactcggacgatgaggtattcacttcc
tctgtccagcctgtacgtgggaagaaacaatctcatcaaagggccacatcacaaccaccg
gtggaggagctcaaacttgatcccagtctcaaattcgactttcatgacgaggctgagggg
tcttggggagtagatgaggttaaagaagtggtctctggaaaagctggtcttggggtggac
gatatcattgccaggcgattgggcaaaccggtcctttctcatcaagagaggaagagacgg
cgcgaggaggaaattgatgaggatgatatttcttccgaagctggagacgaggagatgtca
gatgacgaagacgaagatgaggaagatgacgaggaggaggaagaagaagaagagggggaa
gctgcgacggacgacgatgtcgaaatgtcttctgggtctgaagatgacgaaggggaagta
tcagaaggtggacaagactctcacaacgccgacaacgacgaggatagtgacagttccgaa
aaagacaccgcagcagaagttgctcgcaaaaacgcattcttcgccgctgatccaactacc
gaccccacgctacccacctctttctcaactatgaatctctcccgacctcttctccgagct
ctaacctctctcaatctcatcactcccactcccatccaagctcgtgccataccccttgcc
cttctaggtcgcgatatacttggttcagcagtgacaggttctggtaaaacggccgctttc
atggtacccatcctcgagcgattaacatatcgagaaagaggtcgtggtggacaagcatgt
agagttttgattctttgtcccacacgagaacttgccgttcaatgtgaagaattcggtaag
aaattatctactcaaggtggtctaaacatccgattcgctctattggtcggtggactttct
ctcaatgctcaagctcaaaacctacgtactttacccgatattctcatagcaacaccggga
cgtttgatcgatcatttaaccaacacaccttctttcactctttccgcattggacgtttta
gtcatcgatgaagctgacagaatgttagaagctgggtttacggatgaattgaacgaaatc
gttcgttcttgtcctagaggaagacaaacaatgttattctcagctactatgactgattca
gttgatgaactcgtcaaactttccttggataaacctataagattattcgtggatcctaaa
agaaacactgcgataggattaacacaagagttcgtgaggatcaaatcggatgatactagg
tctcctagtctattggcgttgtgcaagagaacagtcagggagagatgtataatcttcttt
agaagtaaagctttggcacatcagatgagagtggtttttggtttatgcggattaaaagct
gctgaattacatggaaatctgtctcaagaacagaggttacacgctttggaagagttcaaa
cttggaaaagtggattatctcttagcgacggatttagctagtagaggattggatatcaaa
ggtgtggaaacggttatcaattatgatatgccaggtcaattggctcaatatactcaccgt
gtgggtcgaacagccagagcgggaaggaagggaagatccataactctagttggagaggcg
gatagaaaacttctcaaagcagttatcaaacaaagtgaagcggatgaaatccgacatcgt
atcattccctctgaagcagtgacagccatgtcgaaaactcttgatgagatgaaagatgag
attcaagaagttttgaaagaagagaaagaagaaaaagccttacgacaggcagatatggaa
atcaccaaaggggagaatatgatagctcatgaagaagaaatcttttcaagacctgctaga
acttggttccagtctgagaaggaaaagttggcttctaaaaacgctggtaaagcagcttac
acatctggttttccttccgatcctaaaacggagaaggaagaaaagactaaattgaaaaga
ggtatatacgacggtctttcccgtaaaaccaaacgacgtcgaatagcaatgaaggaagat
gaaggtgataaaacagctagtacagcagctataagagctttcaaaaagaatatcagacct
tcgaaaataacagaaccaattcgagctccgatgagtaaaaaagggaaatctggtaagaaa
ggaaagaaagcaagtgcttttgatgaagatagtggtggtagacatgaaggtatgagagct
aaacctgtcaaggtaagtttgaacaagatgaagggtgggaagggtgggaaagggaaagtc
aaagggaaagggagaagatga
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