Tremella mesenterica: TREMEDRAFT_29158
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Entry
TREMEDRAFT_29158 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
tms
Tremella mesenterica
Pathway
tms03018
RNA degradation
tms03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TREMEDRAFT_29158
09123 Folding, sorting and degradation
03018 RNA degradation
TREMEDRAFT_29158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_29158
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_29158
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TREMEDRAFT_29158
mRNA degradation factors
5'-3' decay
Lsm complex
TREMEDRAFT_29158
Spliceosome [BR:
tms03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
TREMEDRAFT_29158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
KOW7_SPT5
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
18491962
NCBI-ProteinID:
XP_007003271
JGI:
Treme1_29158
LinkDB
All DBs
Position
Unknown
AA seq
85 aa
AA seq
DB search
MASTILPLELVDRCIGSPIHVIMKNEREFTGTLMGFDDYVNMVLRDVKEYQVTPGGIIET
PLGQTLLNGNNIVMLIPGGRGPKAI
NT seq
258 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaccatccttcctttagaattggtagatagatgtataggttctcccatacat
gtgatcatgaagaacgagagagagtttacaggtactttgatggggtttgatgattatgtt
aatatggttttacgagatgtaaaagaatatcaagtaacacctggtggaatcatagaaact
cctcttggtcaaacattattaaatgggaataatatcgtcatgctcattcctggtggaaga
ggacctaaagctatatga
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integrated database retrieval system