KEGG   Tremella mesenterica: TREMEDRAFT_29158
Entry
TREMEDRAFT_29158  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
tms  Tremella mesenterica
Pathway
tms03018  RNA degradation
tms03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TREMEDRAFT_29158
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TREMEDRAFT_29158
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_29158
   03041 Spliceosome [BR:tms03041]
    TREMEDRAFT_29158
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TREMEDRAFT_29158
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TREMEDRAFT_29158
Spliceosome [BR:tms03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    TREMEDRAFT_29158
SSDB
Motif
Pfam: LSM SM-ATX KOW7_SPT5 DUF150_C Hfq
Other DBs
NCBI-GeneID: 18491962
NCBI-ProteinID: XP_007003271
JGI: Treme1_29158
LinkDB
Position
Unknown
AA seq 85 aa
MASTILPLELVDRCIGSPIHVIMKNEREFTGTLMGFDDYVNMVLRDVKEYQVTPGGIIET
PLGQTLLNGNNIVMLIPGGRGPKAI
NT seq 258 nt   +upstreamnt  +downstreamnt
atggcttcaaccatccttcctttagaattggtagatagatgtataggttctcccatacat
gtgatcatgaagaacgagagagagtttacaggtactttgatggggtttgatgattatgtt
aatatggttttacgagatgtaaaagaatatcaagtaacacctggtggaatcatagaaact
cctcttggtcaaacattattaaatgggaataatatcgtcatgctcattcctggtggaaga
ggacctaaagctatatga

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