Tremella mesenterica: TREMEDRAFT_30305
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Entry
TREMEDRAFT_30305 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tms03009
]
TREMEDRAFT_30305
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TREMEDRAFT_30305
Ribosome biogenesis [BR:
tms03009
]
Eukaryotic type
90S particles
Helicases
TREMEDRAFT_30305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Helicase_C_2
Cas3-like_C_2
Nrap
NAPRTase_N
DUF3824
Motif
Other DBs
NCBI-GeneID:
18492093
NCBI-ProteinID:
XP_007003924
JGI:
Treme1_30305
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
GLKSSHFITPTPIQALAIPPSLARRDVLGSASTGSGKTLAFLVPMLERLYLLKWGPLDGL
GAVVISPTRELAVQTFNQLRDVGKYHNFSAGLVIGGKPLKEERDRLSRMNILIATPGRLL
QHLDSTVGFESAGVKVLILDEADRLLDLGFLPALRAIVSHFSPGGPNAQNDRQTLLFSAT
QSQDLAALAKLSLHEPLYINCNKPGEEGVVPAGLEQYYAVVGLEKKLDVLWGFVKSHLKM
KGVVFVTSGKQVRFIFETFRRLHPGLPVLHLHGKQKQATRLTIFQRFSSSKSALLICTDV
AARGLDFPSVDWVVQLDCPEDVDTYIHRVGRTARYQSQGKALLFLCPSEEEGMLQRWKDK
GLEVKKIKIKQSKVGSLHQQMQNFAFKEPEIKYLGQRAFISYMRSVHLQKDKTIFKLSEL
PAEEFAASMGLPGAPQIKLFETSKANKSRGGVKQPEVEVDVASEEDEDHENVAAQSKVSG
PSLKSVRTKYDRMFERKNQSILTPHYNSLIRHSSSASESEEEVFTLTRRDHDLPEFGGST
SGKSRKPLISSEDLSKRKLKAGGSKKGLLKIRSGPDKVIFDESGHPTTFYEAGKEAEDIA
RDSKLREKYLDEEKERMRKAHEIDREVARDKKRERKRKRKEKEKEVSKGFFFLSYLPPPP
QPPPSPLFIQKWAFQFKVFP
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
ggtctcaaaagtagtcacttcataaccccaacccctattcaagctcttgccataccacct
tcactggccagaagggatgtactcggatcagcttccacaggttctggaaaaaccctcgct
tttctcgtcccgatgttggaaagactatatcttctcaaatggggtccgttggatggtcta
ggtgccgtcgtcatctcccctacgagagaattagcagtacaaactttcaaccaattaaga
gatgttggtaaataccataatttctctgcgggtttagtcatcggtgggaaacctttaaaa
gaggagagagatagattgagtaggatgaacatcttgatcgctactccggggaggttattg
cagcatttagatagtacagtggggttcgaatcagccggtgtcaaggtgttaatcctcgat
gaagctgatcgtcttttggatctcggattcctacctgcacttcgagcgattgtctcacat
ttctcccctggaggtccgaatgcccaaaacgacagacaaaccctcttgttttccgccact
cagagccaggacttggcagctttggccaagctgtctttacatgaaccgttatacatcaat
tgcaacaaaccgggagaagaaggcgttgttccggcaggtttagagcagtattacgctgta
gtcggcttggagaagaaattggacgttttgtggggttttgtgaagagtcatttgaaaatg
aaaggtgtggtatttgttaccagtggcaaacaggttcgattcatattcgaaaccttccgt
cgacttcaccccggtttacccgtcttgcatcttcacggtaaacaaaaacaagccacacgg
ttgaccatcttccaacggttctcttcctctaaatcagcccttttgatatgtacagacgtt
gccgcaagaggtctagactttccatcggtcgattgggtggtacaattggattgtccggaa
gacgttgatacgtatattcatcgcgttggtcggacagcacggtatcaaagtcaagggaaa
gcccttttgtttttatgtccaagtgaggaagagggaatgttgcagagatggaaagataag
ggtttggaagtgaagaagatcaagataaaacaaagtaaagtgggaagtttacatcaacag
atgcaaaattttgctttcaaagaaccggagatcaaatatcttggacagagggccttcatc
tcatacatgcgctcagtacatttacaaaaagacaagacgatatttaaactctccgaactc
ccagcagaagagtttgcagctagtatgggtctacccggagctcctcagatcaaattgttc
gagaccagcaaggccaacaaatcgaggggaggagtgaaacagccagaggtagaagtagac
gttgcatcagaagaagatgaagatcatgagaatgtcgcggcacaatctaaagtcagtggt
ccatcactcaaatccgttcggacgaaatacgatcgaatgtttgagaggaaaaaccaatct
atcctcactccccattacaattccctcattcgacattcttcttcagcttcagaatctgaa
gaagaagtgttcacattgacaaggagggatcatgatttgccagaattcggcgggtcgaca
agtggaaaaagtagaaaacctttgatatcttcagaagatctatcaaagagaaagttgaaa
gccggcgggagtaaaaaaggtttattgaaaattcgttctggacctgataaagtcattttt
gacgaaagcggtcacccgacgacattctacgaagctggtaaagaggcagaagatatcgcc
agggattcgaaattaagagaaaagtatttggatgaagagaaggaaagaatgagaaaagcc
catgagattgacagggaagtagctagggataaaaagagagagaggaagaggaagaggaaa
gagaaggagaaagaggtgagtaaagggttttttttcctttcctatctcccccctccccct
caaccacccccttcccctctttttattcagaaatgggcattccagttcaaggtttttcct
tga
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