Tremella mesenterica: TREMEDRAFT_30560
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Entry
TREMEDRAFT_30560 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K11096
small nuclear ribonucleoprotein D2
Organism
tms
Tremella mesenterica
Pathway
tms03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TREMEDRAFT_30560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_30560
03032 DNA replication proteins [BR:
tms03032
]
TREMEDRAFT_30560
Spliceosome [BR:
tms03041
]
Complex A
U1 snRNP components
Sm proteins
TREMEDRAFT_30560
U2 snRNP components
TREMEDRAFT_30560
Complex B
U1 snRNP components
TREMEDRAFT_30560
U4/U6.U5 tri-snRNP components
TREMEDRAFT_30560
Complex C
U2 snRNP components
TREMEDRAFT_30560
DNA replication proteins [BR:
tms03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
TREMEDRAFT_30560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
THOC7
DUF3752
Motif
Other DBs
NCBI-GeneID:
18492120
NCBI-ProteinID:
XP_007004433
JGI:
Treme1_30560
LinkDB
All DBs
Position
Unknown
AA seq
117 aa
AA seq
DB search
SQYLHVPKSELDEAQLRELEEYEISQGPLSVLQQAVRNQSQVLISLRNNKKLLARVKAFD
RHANMVLENVKEMWTETPKGKGKKTINKDRFISKLFLRGDSVILGVLRFIIQSREQS
NT seq
354 nt
NT seq
+upstream
nt +downstream
nt
agtcaatacctccacgtcccaaaatccgagctggacgaagcccaacttcgtgaattggaa
gaatatgagatttcacaaggtcccttatctgtacttcaacaggctgttcggaatcaatca
caagttttaatatctctgcggaacaacaaaaagcttctggcgagagtgaaggcgttcgat
cgacacgctaatatggtgttggagaatgtgaaggagatgtggacggaaacaccaaaagga
aagggtaaaaaaactatcaacaaagatcgtttcatttcaaaattgttcctgagaggtgat
tcggtcatattaggtgtgttgagattcatcatccagagtcgagaacagagctga
DBGET
integrated database retrieval system
