KEGG   Tremella mesenterica: TREMEDRAFT_31214
Entry
TREMEDRAFT_31214  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K15542  polyadenylation factor subunit 2
Organism
tms  Tremella mesenterica
Pathway
tms03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    TREMEDRAFT_31214
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_31214
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     TREMEDRAFT_31214
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Gbeta WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_2nd EIF3I ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd eIF2A Beta-prop_RIG_2nd Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_DCAF4 WD40_RFWD3 NBCH_WD40 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_WDR11_2nd Beta-prop_SPT8 MIOS_WD40 Beta-prop_DCAF12 Beta-prop_SCAP Ge1_WD40 Beta-prop_NUP159_NUP214 Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 18492199
NCBI-ProteinID: XP_007004915
JGI: Treme1_31214
LinkDB
Position
Unknown
AA seq 408 aa
MSVAGPSRPSDSWHPSRYLEPNHPDNEEVHEQASYQAAVTRLANDERKRARYKPRRTVDF
TSGVVKWRQLTKLKSIPDVLPTIHPNPSDIINLLPPAAHRTNPSTSICDHFVHTSINKER
SPTRVVKWTPDARRLLTGNDKGQFTLWNGASFNYESITQVHDDSIRAMAYSHNGQALVST
DRLGMIKYFTPHLTNIHGFAGHREACHGVSWSPNDERFVTGGDDGLVKIWDYREGKEEKV
LSGHGWDVRCVDWHPSKGLVVSGSKDMLVKFWDPRTGKDLSTLHSHKSTINTCAWSPSGH
LVATAGGDSTVRLFDIRTFRELEPLKGHTKEINTIEWHPIHPSLFVTGDAAGAIAYWSLV
SPDPSKPISMLESAHEDGVFSLAFHPLGHLLCSGSKDFTARFWCRARP
NT seq 1224 nt   +upstreamnt  +downstreamnt
atgtctgtcgcgggtccttctcgaccttcagatagctggcatccttcccgatatctagag
ccaaatcatcccgataatgaagaagtgcatgaacaagcttcctatcaagcagctgtcaca
cgtctggccaatgatgagaggaagagggcgagatacaaacctcgaagaaccgtcgatttc
accagcggagtggtcaaatggcgtcagctgacaaagctcaaaagcatacctgatgtccta
cctaccattcatccgaatccgtcagatatcatcaatcttctccctcccgctgcacataga
accaatccctccacttcgatatgtgatcatttcgtacatacatccatcaacaaagaacgt
tccccgactagagtggtaaaatggacacctgatgcacgtcgtcttctgaccggcaatgat
aaaggacaatttaccctttggaacggagcgtcattcaattatgaatctatcactcaagta
catgacgattcaataagagcaatggcatactctcataatggtcaagcactcgtctcgacc
gacagattaggaatgatcaaatatttcactcctcatttgaccaacattcatgggtttgca
ggacatagagaggcttgtcatggtgtttcttggagtccgaatgatgagaggtttgtgact
ggtggagatgatggattggtcaagatctgggattatagagaagggaaggaggagaaggtg
ttgagtggacatggatgggatgtcagatgtgttgattggcatccttcaaaaggtttagtg
gtcagtggaagtaaagatatgttggtcaaattttgggaccctaggacggggaaggatttg
agtactttacactcccacaaatcaaccatcaacacttgtgcctggtctccttccggtcat
ctagtcgctacagcaggaggtgattccaccgtccgtctctttgacattcgtactttccgc
gaacttgaacctctgaaaggtcatacgaaagaaatcaacacaatcgaatggcatcctatc
catccatcactcttcgtcactggtgatgcggcaggagccatagcttattggtctttggtc
tctcctgatccgtccaaacccatcagcatgttagagtccgcacatgaagatggtgttttc
tcccttgcttttcatcccctcggtcatcttttatgttccggaagtaaagatttcactgct
aggttttggtgtagagctcgtccg

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