Tremella mesenterica: TREMEDRAFT_31469 Help Entry TREMEDRAFT_31469  CDS       T03139                                  Name (RefSeq) hypothetical protein   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism tms  Tremella mesenterica Brite KEGG Orthology (KO) [BR:tms00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:tms03021]     TREMEDRAFT_31469 Enzymes [BR:tms01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      TREMEDRAFT_31469     5.6.2.5  RNA 5'-3' helicase      TREMEDRAFT_31469 Transcription machinery [BR:tms03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      TREMEDRAFT_31469 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  SEN1_N AAA_11 AAA_12 SEN1_barrel Viral_helicase1 AAA_19 AAA_30 UvrD-helicase nSTAND3 AAA_22 Rubis-subs-bind Motif Other DBs NCBI-GeneID:  18492228 NCBI-ProteinID:  XP_007004944 JGI:  Treme1_31469 LinkDB All DBs Position Unknown AA seq 1969 aa AA seqDB search MGTAPPSDKEIEAVLSKVAASSKPTDATLYPLYSYLLPSVPSQAATSSTTAHWYCPKTSS PLIRDAATYLIFLFAYKAEGMPKTWIDELEHVLLGCPVCARAFGAARRRFASKYLAMFNA QTKENFFQKVDLWQASLILSEYNKASAPGYGSTSTVSITLFDVDDSIVQLLCSEPSLVSK PTSTTPELVSLSLLFSAAIASAPSNPAVSKFGLTPVVVHLLSVDDPAQRSWALNQLPSCA RRPLSFAEWCENGIGSKVQELYLDNRFDSATIRWSALHRLLDSGCLTLETVQKGLLKGHT SVRADAKVGKPIMSVLSTLLGSQTSASDLVHATFQVLLHISPTHHIWSFDVSPELPHTLF SEIKNNPSFRTSLENSCPSSPAETNEHHGKGKGTTTCRSLTWIEDFLLSLRDAKTASGKS SNTGFGESLAKAMNFCFSEMQHTRYPPSLRAAAAECGCRALVRLRTAVATDDHIASPLSS TLDIHATFIATVALRLPDHPSPDWDDARHAARALLLDYFTADGRDVVESMLGLAAISFHE RKRLARKRKLKAAVDPPIPVQNLHRASTYKELWSMAYNALMPTDLEGTAIILKSIAMTAH LEKLDRTGPWSPDSLGEVIKAEDWVSSVRAINTSISSMREYFGRALDSLARQPDATLLRD LWKIAGVPKASVIILLAPAEELHDPVISLLQQVYEDVDDRGDCFRVLLREHPGEAMEGLC TFLSTFIKTANLTPESCSLAKWLVRCFTDILDVLCRASESSEALLQTPSFLADFTSNRPM TKRIADLWHQMTESLAVIFNRTQGWADFYENSIMVDWMRDALIFGRHMTEHVRVFESAAL GQSDSRFDVQSPSESPVKLSSTGRKMIEQLSKVLNELLHWLRLTDIETLHQTFELIKTIL GRLSRSSTPITVELEKTLKELDKFCRRAGTSYPSKLSDDLLSELSELVSGFDISLEDDVQ FVKAVTREEDTKPSHDPSSAPVKKDAPAAKKTNAFVKMMKAASNGSSSHSRSTKSDPVNG KEDEYDDDDFLQKLPASDLDILEKRARIAKTQVPQPPKSTVPPKASIQAAQKLNIDVRPG MYQKKPAGGGFKSKLMQEARREHKFDQMRANVPRPIGGLPTKVPVAGAFGSGLGAYTGQR RPVQPADSGSSASDTSDEESRGVDALMKKQKSPAKIALAAEKRQIKVLGIPISNAVREHE EKRARAHAIKQRLRPDLNSLYRYVLAWDPTHIGPHPPHPPKVAQEFMQLLRVPTTFPDAK RYEQIMLPLFLEELWAQFVNGKDNTAHGMGIMVEISSRAYEDDFLDMELVVQGNIQPDFF VNETDIVLLQQPGARTLFAKVQGFRRKFKDTALKVRILTSMDQRELGAKSRWELKKHTSL STAVREFAALKGLPYYEKPLLRDILAAKGATMPPLSSREVDRAMRSYDVNEPQAKAILGA MQVNGFALIQGPPGTGKTKTISGLVGKFMSERSIPIAMGHGEKPVKPKLLVCAPSNAAID EVCKRLMNGVPSSDGSRLNPTIVRIGIETSVNIAVKDVSLDSLVEARVNADPSSKGGGGE YGKIQAELENVKRLIREQQDKIRLAKDNDERRRQLEDEYQSLVTRRTQLGQQTSKAKDAA RDATRHLDATRRQAREIVLKEADVICATLAGAGHETLSAYTFETVIIDEAAQAIELSCLI PLKYGCTRCIMVGDPQQLPPTTLNPDGEKYAYNESLFVRLARENRSNVHLLSIQYRMHPD ISRLPSKVFYHGALKDGPNMERNTKAVWHENKNYGPYRFFNIEGSEIKAGTSTKNPEEAI AAVNIYKHLEEDFGDRTNLALRVGIITMYREQMYEIKRQFLQAFGGSIMEMIEFNTVDGF QGQEKDIIILSCVRSGPNLRTIGFLRDERRMNVALTRAKSSLWIVGNGSTLERSDERWKV IVGDARERGFFLEVSSDLTFTPSLLLTPLPSIFLTILPSIPFSSLVPLS NT seq 5910 nt NT seq  +upstreamnt  +downstreamnt atgggcacagctccaccctctgacaaagagatagaagctgtgctcagtaaagtggccgct tcttcaaagcccacagacgccaccttgtaccccctctactcgtacctgctcccatcagtc ccctctcaagccgctacctcttctaccaccgcccattggtactgcccaaagacatcttcc cctctcatcagagatgcagctacatatctcatcttcctctttgcctacaaggctgagggt atgccaaagacatggatcgatgagctcgagcacgtcttgttgggttgtcctgtctgcgcc agggcattcggtgctgctagacgacgttttgcttccaagtatctggcaatgttcaatgct cagaccaaggagaatttctttcaaaaggtcgacctatggcaagcatcacttatcctttct gaatacaacaaagcatccgctcctggctatggaagcacttcgacagtgtcgataaccctc ttcgacgtggatgattctatcgttcagcttctgtgcagtgaaccaagcttagtatctaaa ccaacatctacaacacccgaactggtatcactttctttactcttctccgccgccatcgcc tccgctccgagtaatccggccgtctcaaaatttggtctcacacccgtcgtcgtacatctt ctctcggtggacgatcctgctcaaagatcatgggcattgaatcagctcccatcatgtgca cgtcgaccattaagtttcgccgaatggtgtgaaaatgggatcggatcaaaggtacaggag ctttatctcgacaacaggtttgacagtgcgactatcagatggtcagcattacatcggcta ctcgactctggctgtcttacgttagagaccgtgcagaaaggcttactcaaagggcacacc tctgtcagagccgatgcaaaagttgggaaaccgatcatgtccgtcttgagcacattattg ggaagtcagacatcagcgtccgatcttgtccatgcgacattccaggtcctactccatata tcgcccacacatcatatatggtcatttgatgtatcccccgaactccctcacaccctcttc tccgagatcaagaataatccctcatttcgtacatctctggaaaattcctgtccctcgtcg cccgccgaaacaaatgagcatcatgggaaggggaaggggacgacgacatgtcgctctctc acttggatcgaagatttcctcctgtctctgagggatgccaagaccgcctcgggcaagtcc agtaacacgggatttggcgaaagtctagcaaaggccatgaacttctgcttctccgagatg cagcacactagatatcctccctccctgcgtgccgctgccgcagagtgtggttgcagggca ctggtcagattacgaacagcagtcgcaactgatgaccacatcgcctctcctctgtcatcc actctcgacattcatgccacctttatcgctacagtggccctgcgtttacctgatcatcct tcgccagattgggatgatgcccgtcatgcggctcgggctttacttctcgactacttcacc gccgatggacgagatgttgtagaaagtatgctcggattagcggccatctctttccatgag aggaagcgtctagctcgaaagcgtaaactgaaagctgccgtcgatccaccgataccggtg cagaaccttcaccgcgcttcgacgtataaagaactctggtccatggcttataatgcgctc atgccaactgatcttgagggtacggcaatcatcttaaaatcaatagcgatgacggcccac ctcgagaaactcgatcgaaccggcccgtggagtcctgatagcctaggtgaggttatcaaa gccgaggattgggtttccagtgtgcgagcgatcaatacatcaatatcttcaatgcgggaa tatttcggccgcgctttggactctcttgctcgtcaacctgatgcaactctcttgcgagac ctctggaagatcgccggtgttcctaaggcgagcgtaatcatattgcttgccccggccgaa gaacttcacgaccctgtcatcagtttattacagcaagtatacgaagatgtcgacgatcga ggagactgttttcgtgtccttctgcgagaacatcccggtgaggccatggaaggtctttgc actttcctctcgaccttcatcaagactgcgaatctcacccctgaatcatgctctcttgct aaatggctcgtacgttgcttcaccgacattctcgatgttctatgccgagcctccgaatct tccgaagctctcttacaaactccatctttcctcgcagacttcacctcaaatcgaccaatg acaaaaaggattgcagacctatggcaccaaatgactgaatcactagccgtcattttcaat cgaactcagggttgggctgatttctacgaaaattctatcatggtggattggatgcgagat gctctcatctttggtcgacatatgacggaacatgtgagagtattcgaatctgctgctctt ggtcaaagtgattctcgcttcgatgtacagagtccatcggaatcgcccgtgaagctctcc tcgaccggacgaaagatgattgagcaactctcgaaagtgttaaatgagctattgcattgg cttcggctgaccgacattgaaacgttacatcagactttcgagctgatcaaaaccatcctt ggtcggttgtcgcggtcgtccactcctatcaccgtcgaattggagaagacgctgaaggag ctggacaaattttgtcgacgagcggggacttcatacccttccaagctctccgatgatctt ctttctgaactttcagagcttgtgtctggattcgacatctcactggaagatgatgtacag ttcgtcaaggccgtcactcgggaagaggacacaaaaccctcgcacgatccctcatcggca ccggttaaaaaggatgcaccagccgccaagaaaacaaacgcgtttgtcaagatgatgaaa gcagcttccaacggctcgagctctcattcacggtccactaagagcgatcccgtgaatggg aaggaagacgagtacgacgatgacgatttcctgcagaaacttcctgcctctgatctggat attctggaaaaacgtgctcggatagcgaaaacacaagtccctcaaccaccaaaatccact gtgccaccgaaggcatccatccaggcggctcaaaagctcaatatagacgttcgacccgga atgtatcagaaaaagcccgctggtggtggttttaaatccaagctcatgcaagaagcccga cgagaacacaagttcgatcaaatgcgtgctaacgtgccacgccccattgggggtttaccc acgaaggttcccgtagctggtgcgttcggtagcggtttaggagcctacaccggtcaacga cgacctgtccaaccagcagattcaggatccagcgcttctgacacctctgacgaggagagc agaggggttgatgccctcatgaagaaacaaaagtctcctgccaaaatagcactcgccgcc gagaaacgtcaaatcaaagtcctcggtatcccaatttcgaacgccgtccgggaacacgaa gagaaacgtgcacgcgcccatgctatcaaacaacgtctccgtcccgatctcaattctttg tatcgctatgtcctggcatgggatcctacccatattggaccgcatcctccgcatcctccg aaagtggcacaagagttcatgcaattacttcgtgtcccgaccaccttcccagatgccaaa cgatacgagcagatcatgcttcctttgtttctggaagaactgtgggctcagtttgtcaac ggcaaagataacaccgctcatgggatgggtataatggtagagatttctagtagggcctac gaggatgatttcttggatatggaactggtcgtacaggggaacatacaacctgatttcttt gtgaatgagacggatatcgtcctgttgcaacaacctggagccagaacattgtttgccaaa gtacaagggttccgacgcaagttcaaagataccgccttgaaagtgagaatcttgacttct atggatcaaagggaattaggagcgaagtcgaggtgggaattgaaaaaacatacttcattg agtaccgctgtcagggagtttgccgctctgaaaggtctgccttattacgagaaaccatta ttgcgggacatactcgctgccaagggagctaccatgcctcctctctcatccagagaggtg gacagagcaatgcgttcatacgatgtcaatgaaccacaagccaaggccatcctgggtgcc atgcaagtcaatgggtttgctctgattcagggtccaccaggtacgggtaagaccaaaaca atcagtggtttggttggcaagttcatgtcagaacgatctatacccatagccatgggtcat ggagagaaacctgtcaaacctaaacttctcgtctgcgctccgagtaatgctgccattgac gaagtctgcaagagactcatgaatggtgtccccagttctgatggaagtcgactgaaccca accatcgttcgaattggaatcgagacatctgtcaacattgccgtaaaggatgtatccctg gacagtttggtagaagccagggtcaacgcagacccttcttcgaaagggggcggtggagaa tatggcaagattcaagcagagttggaaaatgtcaaacgtctcatacgtgaacaacaagat aagatccgtttggcaaaggacaatgacgaaagacgtcgacaattggaagacgaatatcaa tctttagtcaccagacgtactcagttaggtcaacaaacttccaaagccaaagatgcggct agagacgctactagacatctcgatgccacacgtcgacaagctagagaaatcgttctcaaa gaagcagatgtcatttgtgccacattagcaggagcgggtcacgaaactctatcagcttac acattcgaaactgtcatcattgatgaagctgctcaagctatcgaattgtcatgtttgata ccattgaaatatggttgtacaagatgtataatggtcggtgaccctcaacaattaccacct acaacactaaatcccgatggagaaaaatacgcatataacgaatctcttttcgtccgttta gctcgtgaaaatcgatcaaacgttcatttactaagtatacaatatcgtatgcacccagat atctcacgacttccttccaaagtgttttatcatggtgctttgaaagatggaccgaatatg gaacgtaataccaaagctgtatggcatgaaaacaagaattatggtccctatcgatttttt aatatagaaggttcagaaataaaagcaggaacatctactaaaaatccagaagaggcaatc gccgccgttaacatttataaacacttggaagaagattttggagatagaacgaatttagca ttacgagttggtatcattacaatgtatagagaacaaatgtacgaaatcaaaagacaattt ctacaagcttttggaggttctataatggaaatgatagagtttaatactgttgatggtttt caaggacaggaaaaagatatcatcattttatcttgtgttaggagtggaccgaatttgagg actattggttttttgagggatgaaagaaggatgaacgtggctttgactagggcgaaaagt agtttatggattgttggaaatggttcaactttagagaggagtgatgagagatggaaggtt attgttggggatgcgagggaacggggattctttttggaagtgagttctgatttgacgttt actccaagtttacttctcactcctcttccttctatttttcttaccatactcccttctatc cccttctcttcccttgtgcctctttcctga

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