Tremella mesenterica: TREMEDRAFT_31716
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Entry
TREMEDRAFT_31716 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K11600
exosome complex component RRP41
Organism
tms
Tremella mesenterica
Pathway
tms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TREMEDRAFT_31716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_31716
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TREMEDRAFT_31716
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
TREMEDRAFT_31716
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
18492260
NCBI-ProteinID:
XP_007005288
JGI:
Treme1_31716
LinkDB
All DBs
Position
Unknown
AA seq
252 aa
AA seq
DB search
MSSSRLEILNDGGLRHDARRPYELRSLSLLLSPHPTADGSATVTSGLTSVTVTIFGPREP
RIRSSSSHDHVTLTVEVGVPPWSQQSGMKRTRGDRRLVEMGMSLKQSFEPVIMGNLYPRS
EILINVQVLSSDGGILPTAINATTLALIDAGIPLLDYLTSISLGLHLTQPLLDLSQPEES
DLPSLVVACLPASGKVTLAQMETRLHVDRFEEMLLLGVEGCGVIKMEMERVVKERTEGLV
GRYKMGVKGEGE
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcctctaggctagaaatactgaacgatggtggtctacgacacgacgctcgacgt
ccatacgaacttcgttctttatcacttctcctatcccctcatccaacagcagacggttca
gcaaccgttacatccggtttgacttctgtaacagtaacaattttcggtcctcgtgaacca
cgtatcagatcttcatcatcacacgatcatgttactttaactgtggaagtaggtgtacct
ccatggtctcaacaaagtggcatgaaaagaactagaggagatcgtcgtttggtggaaatg
ggaatgagtttaaaacaaagttttgaacctgtcatcatggggaatttatatccacgtagt
gaaattttgataaatgtacaagttttaagttctgatggaggtatcctacccacagctata
aacgcaacaactttagctttgatagatgcaggtataccacttctagattatctcacttct
atatctttaggtcttcatttaactcaaccattattagatctttcacaaccggaagaatca
gatttaccttctttagtcgtcgcttgtttacctgctagtgggaaagttactttggcacag
atggaaactaggttacatgtggataggtttgaagagatgttattattaggtgtggaaggt
tgtggggttataaagatggagatggaaagggtggtcaaggagaggacggaggggttggtg
gggaggtataagatgggtgtgaagggggagggggagtga
DBGET
integrated database retrieval system
