Tremella mesenterica: TREMEDRAFT_31912
Help
Entry
TREMEDRAFT_31912 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12590
exosome complex component RRP46
Organism
tms
Tremella mesenterica
Pathway
tms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TREMEDRAFT_31912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_31912
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TREMEDRAFT_31912
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
18492283
NCBI-ProteinID:
XP_007005311
JGI:
Treme1_31912
LinkDB
All DBs
Position
Unknown
AA seq
278 aa
AA seq
DB search
MTSRQRRGVLEYRPISINLGELDRADGSARFSFGSTSALASSSGPLEVRILKENPTGSTL
EIIHRPLDSIPSTSSRSFEQSLQSIFSSILQLDKHPRSMIQSVIQSFSPSSFTTTSVNSI
IDVDPSSKGVWPTPSRDIPDQGKRRSAPIGEGKIFFSDRSVCLNALSLSLLDSGSIGMMA
LPISINLAFLTLSDAQVLVLVIDPTVEEEIKAISRHIFAWAFGYGYGIAERNKKGVQEGK
GELVWAESEGDFSRSEVSAFILPVNIVTMGESYLFSRE
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtagacaacgtagaggagtgttggaatatagaccgatttccatcaatttgggt
gaattggatagagcggacggttcggccagattttcttttggctctacatcagcccttgca
tcctcttccggtccgttggaagttcgtatcctcaaagaaaatcctactggatcaacattg
gaaatcattcatcgtccattagattcaatcccttctacttcttctcgttcgttcgaacaa
agtcttcaatcaatcttttcatcaatattacaacttgataaacatcctagatctatgata
caatcagtcattcaatctttctccccttcatcgttcactaccacttccgtcaattccatt
attgacgtcgatccctcgagcaaaggggtatggccgaccccttcacgggacatcccggac
caagggaaaagacgatcggctccaataggagaaggaaagattttcttttcggatcgatct
gtttgtttgaatgctttaagtttatctttacttgattctgggagtattggaatgatggct
ttacctatcagtatcaatcttgcttttttaactttatctgacgcgcaggtgctggtattg
gttattgatcccactgtggaagaagagatcaaggcgattagtagacatattttcgcttgg
gcgtttgggtacggatatggtatagcagaaaggaataaaaaaggggttcaagaaggaaaa
ggggagttggtatgggcggaaagtgagggagatttctctagatccgaggtgagtgctttc
atcttgcctgtaaacatagtgaccatgggcgaatcttacctgttctcccgggaatag
DBGET
integrated database retrieval system
