Tremella mesenterica: TREMEDRAFT_39321
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Entry
TREMEDRAFT_39321 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tms
Tremella mesenterica
Pathway
tms03420
Nucleotide excision repair
tms03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TREMEDRAFT_39321
03430 Mismatch repair
TREMEDRAFT_39321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_39321
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TREMEDRAFT_39321
DNA repair and recombination proteins [BR:
tms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TREMEDRAFT_39321
MMR (mismatch excision repair)
Other MMR factors
TREMEDRAFT_39321
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
AAA_11
ResIII
Motif
Other DBs
NCBI-GeneID:
18493037
NCBI-ProteinID:
XP_007004972
JGI:
Treme1_39321
LinkDB
All DBs
Position
Unknown
AA seq
546 aa
AA seq
DB search
MNVVMRDTESGKDHPGSATFLEALNPAQLKAVTADPSVPLQILAGPGSGKTRVLTSRVAY
LVKHHGYKPMQIVAVTFTNKAANEMKKRLTSLLGSKAADALVLGTFHATCARYLRRYGQL
IGLPNNFAIADADDCKKIISGLLKAKAEIIRASQMSLKDSGVLSEISKAKAKEEDPEGMA
VRAARDPNTSTSTLAIIAELYAEYEATLREANSLDFDDLLVFGLRLFRDSPRILESCRHI
LVDEFQDTNTTQYELMKCFAKAHGGVSVVGDPDQSIYGWRSAEVENLNKMITDFPGVQAI
HLEENYRSTGSILHAAHSVVSQDRNRIPKNLYTSHPKSTTVTLKVFSTPVIEASFIATEI
KRLIAYSGNVLNHGDFAVLLRSNALSRNIEAALQKDSIPNRVVGGHKFFERMEVKDLLAY
LQLADNPNFLPAFLRVVNVPRRAIGDKSVADLLAAAKAEKLSPMELSESIIDGAQLPEGF
KPAMKKNLANFVGVVRKVRRAAEKRTPVAELLRVIIQKIGYEEFLRTSQQDFDSRWENVQ
ELVRVF
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtggtcatgcgtgacacagaatccgggaaagatcatcccggctcggcaaccttt
cttgaggcgctcaatccggctcaactcaaagccgtcactgcagatcctagcgttcccttg
cagatccttgcgggtccgggatcaggaaagaccagagtccttacaagccgagttgcctac
ctagtcaagcaccatggttacaagcccatgcagatagtagccgtcacattcactaataaa
gctgcaaatgaaatgaaaaagagattgacttctcttttagggtctaaagccgcggacgcc
ttggtattgggaactttccacgcaacttgcgcgagatacctcagacgctacggacagctc
attggcttacccaacaactttgccatagccgacgcggacgattgcaagaagatcatttcg
ggtctactcaaagccaaggctgagatcatccgagcctcacagatgtctttgaaggactcc
ggcgtcttgtccgagatttcaaaggcaaaagcgaaagaagaagatcctgaaggaatggcg
gtcagagctgcgagagaccccaatacttcgacaagcactctggcgatcattgctgagttg
tatgcagaatacgaggcaacattgagggaagcaaattcacttgattttgatgatctactg
gttttcggattgcgactgttccgtgattccccccggattctagagagctgcagacacatt
ctagtggacgaatttcaagacacaaacaccacccagtacgagctgatgaaatgctttgcc
aaagcacatgggggagtgagtgtggtaggagatcccgaccaatcaatatacggttggcgt
tccgcagaagtagagaacctcaacaagatgataaccgactttccgggggtccaagccatc
cacctggaagagaattaccgctcaactgggtctatactccacgcagcgcattctgtcgtc
tcgcaagatcgcaatcgaattccgaagaatctctacacttcgcatccaaagagcacgacc
gtcactttgaaagtgtttagcaccccagtcatcgaagcttccttcatcgctaccgagata
aagcgtttgattgcctactccgggaacgtccttaatcacggggattttgctgtccttctc
agatccaacgcactttccagaaacatagaggcagccttgcagaaggatagcattcctaat
cgagtagttggtgggcacaaattcttcgaaaggatggaggtgaaagacctgttggcatat
ctgcaactggccgacaacccgaactttctgccagcattcctgcgggtggtaaatgttcct
cgaagagcgatcggtgacaagtccgtcgctgatctgcttgcggctgccaaagctgaaaag
ctctcacccatggagctgtcagagtctataatcgatggtgctcaattgcctgaaggattc
aaaccagcgatgaaaaagaatcttgccaactttgtcggcgttgtgcgcaaggtccgtcgc
gcagctgagaagcgcaccccagtcgctgagcttttgagagtgatcatccagaaaataggc
tacgaggaatttcttcggacctcccagcaggattttgactcacgttgggagaatgtgcag
gagttggtgcgtgttttctaa
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integrated database retrieval system
