Tremella mesenterica: TREMEDRAFT_40008
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Entry
TREMEDRAFT_40008 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
tms
Tremella mesenterica
Pathway
tms03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
TREMEDRAFT_40008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_40008
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
TREMEDRAFT_40008
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_29
ABC_tran
AAA_27
AAA_30
Motif
Other DBs
NCBI-GeneID:
18493101
NCBI-ProteinID:
XP_007006035
JGI:
Treme1_40008
LinkDB
All DBs
Position
Unknown
AA seq
959 aa
AA seq
DB search
MTLAEQRKIEATQAKRDAEESYKFLLPENLKDAEGRRPSDPDYDGRTLYIPKEDWRGFTP
FERQFWEIKQNHYDTVLFFQKGKFFELYEGDAQIGHDQFDLKLTKRVKMQMVGVPEQSFD
EFAAKFLAHGYKVGKVEQVETAIGAELRRNAGKGSSTLKEDKIVQRELAQIFTNGTIVDG
AYLSTHESNHCVAVKEQVDPNGTVVYGVCVLDASTGEFQLTALEDDVLRTKLGTLFRQIR
PKELLHAKGNLSSPTLRLLRNISPPNVLWQDFKDGVEFYPVAKTLEELGKLFEVEGDLAD
MKATLPNAIKTMLNEPLAIEALGGMLFYLRSLNLDKDLVSQGNFTIFDPTREGKVLILDG
QSLGHMEILINNEGGHEGTLLSLLQNCVTPSGKRLFRMWITAPLCEVRAINDRLDAVDDI
MHHPDFAGMFTSSFKNLPDLERLVSRAHAGSMRQKDFLTIIEGFQTVSSTLKTLVSSSSS
FSTSPVPDLLRGAPDLNPLLQHMRTLYHVVQEGKTIDILPTQGSDRECDQADANVAEQEG
ILEQLREKARKQLHLARGEIAYWHSNQGGKEIYQLQVAADVEVPSSWRKQSGTKTVSRYY
NSEITPVIRKLQEEREMQSVAKKTFFRRLLQKFDQSRREWLNAVKTVAELDCLVSLAKAS
SNMDEPKCRPVFINSPEAFIDFTELRHPSMCLRADFIANDVRLGKSEPRTVLLTGPNMAG
KSTLLRMTASAVIMAQLGCYVPSASATLSPIDRIQTRMGAYDNMFASASTYKVELDECSK
ILREAGPKSLVILDELGRGTSTHDGMAIAMAVLHHLATHTLPLGFFATHYGLLADEFLYH
PNIRNMHMQTHVDEDLLQVVFLYKLIPGVAESSHGTHVAHMAGVPTSVVTRAQKVSAEFF
DDTKKRLATRRKTTIPLTAQADFSWLIRLAMGQNEETTASLSQRLKMVTEAIGGYDLSG
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttgcggaacagcggaagatagaagccacacaggccaaacgtgacgccgaagaa
tcgtacaagttccttcttccggaaaacctcaaagacgccgagggtcgccgaccatctgac
cctgattacgatggccgtactctttatatccccaaagaggattggagaggtttcacacca
ttcgagagacagttttgggagatcaaacagaaccattacgacactgttctcttcttccaa
aagggcaaattcttcgaactttatgaaggagacgcacaaattggacatgatcaatttgac
ctcaagctgactaaacgagttaagatgcaaatggtcggagtgcccgagcaaagtttcgat
gagtttgccgccaagttcctggcccacggttataaggtaggcaaagtagaacaagtagag
acggccataggtgccgagttgaggaggaacgccggaaagggctcttctactctgaaagaa
gacaagatagtgcagcgtgagctcgcgcagatcttcaccaacgggaccatcgtcgatgga
gcgtatctttccacccatgaatcaaatcactgcgtggctgttaaagagcaagtagatccc
aacggcaccgttgtttatggagtatgcgtactcgacgcctcgactggcgagttccaactc
accgccttggaagacgacgtccttagaacaaagttgggcacgttattccgtcagatccgt
cccaaggagttgctacacgctaaaggcaacttgtcctccccgactttgcgtttgctgcga
aacatttcaccgcctaatgtcttatggcaagacttcaaggatggtgtcgaattttatccc
gtggcaaaaactctcgaggagctagggaagctttttgaagttgagggtgatctggcagac
atgaaagcaactctacctaatgcaatcaagaccatgttgaatgaacccctcgccatcgaa
gctttgggtggcatgctattttacctgcgctcgcttaatttggacaaagatctggtttcg
cagggcaatttcactatcttcgatcctactcgtgaaggcaaggttcttatcttagatggg
cagtctttgggacatatggaaatattaatcaacaacgaaggtggtcacgagggtactttg
ttgtctctgcttcagaattgcgtgactccttccggtaaacgattattccgcatgtggatc
actgcacctttgtgtgaggtgcgagcaatcaatgacagacttgacgccgtcgacgacata
atgcatcacccagactttgctggcatgttcacttcttcgttcaagaatttgcccgacttg
gaacgactcgtctcccgtgctcatgcgggttcaatgagacagaaggactttttgacgatc
atcgagggcttccagacagtttccagcacgctaaagacgcttgtctcgtcatcctcatct
ttctccacatcgccagtgccggacctacttcgtggagcgcccgatctgaatcctctacta
cagcacatgcgcaccctgtatcatgtcgtccaagaggggaagaccatcgacatcctaccc
actcaaggctcagacagagagtgtgatcaagccgatgccaacgtcgcagagcaagaaggt
atcctggagcaactgcgagagaaagcaaggaagcaacttcatctcgcccggggtgagatc
gcatattggcattctaaccaagggggcaaggagatctaccagttgcaagttgccgccgat
gttgaagtaccctcgagctggaggaagcagagtgggacaaagactgtgtctcggtattac
aattctgagatcacgcctgttatccgaaaactgcaagaggaaagagagatgcagagtgtg
gccaagaagactttctttcggcgtttgctacaaaagtttgatcaaagtcgtcgtgaatgg
ttgaatgctgtcaaaacagtagcggagctcgactgtctcgtgtcactcgccaaggcatct
tccaatatggacgagcccaaatgtcgacctgtcttcataaacagtcctgaagcgtttatc
gactttacagagcttcgtcatccctccatgtgtcttcgggcggatttcatagccaacgac
gttcgcttagggaaatcggagcctaggacagtcttactcaccggacccaacatggccggg
aagagcacgttactccgtatgaccgcatcggccgtgatcatggctcaattgggatgttat
gtcccctctgccagcgcgacattgagtcccatcgataggatacaaacacgtatgggagcg
tatgacaacatgttcgcctctgccagtacttacaaggtggagttggacgagtgtagcaag
atcctccgtgaagctggacccaaatctttggtcatcctagacgaactcggtcgaggtact
tcaacacacgacggtatggccattgccatggctgttttacatcatttggctactcatact
ctccctctcggtttcttcgctacgcattacggcttactcgcggatgaatttctttatcat
cctaatatccgaaatatgcacatgcagactcacgtggatgaagatcttctccaagtggtc
tttttatacaaacttatccccggtgtggccgaatcgtcacatgggacccacgtcgcgcac
atggcaggagtccccacatccgtagtcacccgtgctcagaaagtctccgcggagttcttt
gatgataccaaaaaacgactcgccactcgtcgaaagaccactatacctctcactgctcaa
gcggatttctcatggttgataagactcgccatgggtcagaacgaagaaacgactgccagt
ctttctcagaggttgaaaatggtcactgaggccatagggggatatgatctgtccggttga
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integrated database retrieval system
