Tremella mesenterica: TREMEDRAFT_40560
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Entry
TREMEDRAFT_40560 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K14829
pre-rRNA-processing protein IPI3
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tms03009
]
TREMEDRAFT_40560
Ribosome biogenesis [BR:
tms03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
TREMEDRAFT_40560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
WDR54
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
18493164
NCBI-ProteinID:
XP_007007016
JGI:
Treme1_40560
LinkDB
All DBs
Position
Unknown
AA seq
473 aa
AA seq
DB search
MLPQEIILSACSTSTPGAGPSRPNTSLVPSIQAHDLLTCLPLHSYKSSTSALHSLSYVPS
RNGQGGTIMAVQENKSLLYVWAWQKDQMLSKLHLPDKLTCFSISPNGVWATGGSPGGQIY
LWELASGTLLSSFSAHYRQVVSLTFTPDSRLLLSASLDGSIHIHLVARLAEADHLGKPYG
TLRDHTLAIRDVVVGKTSGVHGGRCWTISDDGTVKMWDLHPPFDLLCTFSLTPASIPTAL
VVDSSERFFYVSTSNGDIFYVPLFRRRDEVGGLGAVEAVGGGVFGSSAVKLEGGRVISLK
TAITALALSITASHLLVGTVAGTVQIHSLPSHQHLSTISLPGPCSYISTLPRPPDMPVGP
STTTKDLWPVMEVKPLERVKNPPSWRTREASILLRADLDRLDSLRSVPVTKGNCAGLSVA
VESQGTRYSLTEEKLRVLQEENTALREGLERATRINETMWRSIVDGVVESESS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgttacctcaagagatcatcctctcggcctgctccacttcaacgccgggagcaggacct
tctcgtcccaacacttccctcgttccttccatccaagctcatgatctccttacctgtctt
cctcttcactcgtacaagtcttccacctctgctttgcattcactttcctacgtccccagt
cgtaatggacaaggtggtaccatcatggctgttcaagagaacaagtcactcctctacgtc
tgggcatggcaaaaggatcagatgctttccaagttacatctccctgacaagttgacatgc
ttttcaatatctcccaacggtgtatgggcaaccggtggttctcctggaggtcagatctat
ctctgggaattggcctctggtacccttttgagctccttttccgcgcactaccgtcaagta
gtgtccctcacctttactccagactctcgactacttctctcagcctcactcgacggctct
atacacatccacctcgtcgctagattagcagaggccgatcacttgggaaaaccatatggc
actctgagagatcacacgctcgctatacgagatgtcgtagtagggaaaacttctggcgtt
catggaggccgatgttggacaatatcagatgatggaactgtcaagatgtgggacctacat
ccgccctttgatctgctctgcactttctctctcacccctgcatctatccccaccgcgttg
gtcgtggattctagtgaacgattcttctatgtatcaacgtctaatggagacattttctac
gtcccattgttcagacgccgagacgaggtgggaggattgggcgctgtcgaagctgtggga
ggaggagttttcggaagcagcgcggtcaagttagaaggtggccgtgtcatatctctcaaa
acggccataacagctctggccctttccatcaccgcttcacacctattggtaggtacagta
gctggcaccgttcaaatacactccctcccctctcatcaacacctcagtacgatctcccta
cccggcccatgttcatacatttccactctaccccgtccgccagacatgcctgtcggcccg
tcgacgacgaccaaagatctctggccggttatggaagtaaaacctttggaacgggtgaaa
aaccctccttcttggcggaccagggaagcctcgatcttacttcgggcagatctagatcga
cttgacagcttgaggtcagtaccggtcaccaaagggaattgcgctggtctttctgtggca
gtggagagtcagggaaccagatattctctcacagaggaaaagctgcgtgtgctgcaggag
gagaacactgccctgagagagggactggagagggcaacaaggattaacgagacgatgtgg
aggagcatcgtcgatggagtggtggaaagtgaatcatcttga
DBGET
integrated database retrieval system