Tremella mesenterica: TREMEDRAFT_40794
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Entry
TREMEDRAFT_40794 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
tms
Tremella mesenterica
Pathway
tms04138
Autophagy - yeast
tms04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09140 Cellular Processes
09141 Transport and catabolism
04138 Autophagy - yeast
TREMEDRAFT_40794
04148 Efferocytosis
TREMEDRAFT_40794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tms04131
]
TREMEDRAFT_40794
Membrane trafficking [BR:
tms04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
TREMEDRAFT_40794
Hops complex
TREMEDRAFT_40794
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_11
TPR_Vps41
zf-RING_16
zf-RING_Vps41
OVT1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
18493189
NCBI-ProteinID:
XP_007007290
JGI:
Treme1_40794
LinkDB
All DBs
Position
Unknown
AA seq
1165 aa
AA seq
DB search
MSMLDDFVEHSAGPSLPRHSSGAYRAPVPVGGEYGIDAVEYEGFEPDLSEDSIEGDTSLV
TALETGFIPSSRNDPSLSPLFALSLVQYSPPSAILHLVSSNNHLFLATNPLSIVIIDLNK
PEDLLTILLPRPAPDKGSPNPQTKDGPVIHRLFVDPAARHLIITTTTGDAFYLPLSPGNP
AVQSRRPRPLRLRAAITAVGWSPVSGTAAEGDNQASKGDTVTPPATDVLLGTTTGQILSL
PLPPQDDIFKSVAIGMSKPLERDMQTVYTLPDPQPVTGVAFGFWPAASKGGKRRAWVVIT
TNERMYEVQGDVSSTVAGGKGGGWVEEVFKPAREGAPKFQELPGQPPNSELKVYLPVVDG
QNAASLPAPSALAWLTAPGLYASPIAASSGGDILPKPSLLPYPLSDESTPPPFSRTAVST
TPRLPPVPISVSITQWHWLLLYPTRIVGISRESEKQVWEENLPLAVDERATGLSSDPVSK
TFWIFTDRAILEVLVSNEDRDVWRAKVEKSDFVEALRYARTPAQKDIVLSRQGDYQFEQG
RYIQAAQSYAKSSRNFEFVALRFVDADERDALRVYLSDCLDRLDKKDRTQRMMLATWLIE
IYLSKCNTLEDIVAAESATSDVESLKIERQMMEEDMRNFISTYLNDLEPKVVYELILSHG
RTDLYLFYADLKKDHERVVEHWVDEEDWLKAIDVLNRQTSVELYYRFASILMRFRPKETV
DAFIRQPVLSPRRLIPALLQYSSPPPPVAADHTIRYLLHLIHQQHLTDTIIYNLLITRFA
THPDPDSGPLLRFLMACPDDPLTEKPYYDLDYALRLCKQNNRVEPCVLIYSKMGLYENSV
DLALSKGDLELAKINADRPEDDEGLRRKLWLKIARYVVQEQRDIKSAMKFLEATDLIKIE
DILPFFPDFSVIDDFKSEICAALEEYSAKIDALRSEMDEATQSAEAIRKDIDGLSGRFVT
IDAGDKCGKCGLGLVSRQFYVFPCQHGFHADCLISMAMEYLPAPSLRRILHLQNELIQSD
ISNRTLLSSNFTPNGSRPETPSRKGKESLRSREITSGSAATDALLGLTGRNQLLAAGDKL
RELIIPDALAQAVSAGFTSIPGVGGNVGKKGKTRKDREREEEKSEAARKELDGIVAAVCP
LCEGAVVNLDKGFIKENEDARDWEV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgctcgatgactttgtcgagcattcggctggcccttcactccctcgtcattcc
tctggagcatacagggcacctgtacctgtcggcggggagtatggcatcgatgctgtcgaa
tacgaaggctttgaacctgatctttcggaggacagtatagaaggagatacctcccttgtc
accgctctagaaaccgggttcattccttcttctcgaaatgatccctccctctcacctcta
ttcgctctctcactcgttcaatattcccctccttctgcaatacttcatctagtcagctcc
aacaatcacttgttcctcgccacaaaccctctttccatcgtcataatcgacttgaacaag
cctgaagatcttctcaccatccttcttcctcgtcctgctccagataaaggttctccgaac
cctcaaacgaaagatggtccagtcatacaccggttatttgtggatcctgcggcaagacat
ctgattatcaccactaccacgggagatgctttctatctacctttgagccctgggaatcct
gctgttcaatcgagacgccccagaccattacgtctccgagcagccatcactgcagttgga
tggtctcccgtgtctggaaccgccgcggaaggagacaaccaggcttctaaaggtgacact
gtaactcctccagctacggacgtcttattgggtacgaccacaggtcaaatattgtctcta
ccactcccaccacaggatgatatcttcaaatcggtcgctatcggtatgtctaagcccctg
gaaagggatatgcagacggtgtacactcttcccgatccacagcctgtcactggagtggct
ttcgggttctggccagcagcgagcaagggaggtaaaagacgtgcctgggtcgtaattacc
acaaatgaaagaatgtacgaagtacaaggagatgtgagtagtacagtggccggtggaaag
ggtggaggttgggtagaggaggtcttcaaacctgctcgagagggtgctcccaaatttcag
gagcttcctggacaacctccaaactcagagctgaaagtctatcttccagtagttgacgga
caaaatgctgcatcacttcctgcaccgtccgccctcgcgtggcttactgctcctggtctg
tatgcctccccaatagcagcgtcctcgggaggggacatcctgcccaaaccttctctactt
ccgtaccccctttcagacgagtctacgcctcctccattcagccgcactgcagtatccact
acgcctcgattacctccggtacctatatcggtctcgatcacgcaatggcactggttgctg
ctgtacccgactcgaattgtagggatcagtcgagagagtgagaagcaggtatgggaggag
aatcttcctctggccgtggatgagcgggcgaccggtttgtcttccgatcccgtttctaag
actttctggatctttacagaccgcgccatccttgaggtattggtcagcaacgaagatcgt
gatgtttggcgggcaaaggtggagaagagtgactttgtggaagctctacgatatgctcgg
actccagcacagaaagacattgtcctgtctcgtcaaggggactatcaatttgagcaagga
cgctatattcaagccgcacagtcatatgccaagagtagccgaaacttcgaattcgtcgct
ctcaggtttgtcgacgccgatgaacgggatgccctccgtgtctatctctcagactgtttg
gaccgtctagacaaaaaggatcgcacgcaacgtatgatgcttgccacttggctgatcgag
atttatctgagcaaatgtaatacgttagaggatatcgttgctgcggaatcggccacatca
gatgtggaaagtttgaaaatcgagaggcagatgatggaagaagacatgagaaacttcatt
agtacttacttgaatgacttggagccgaaagttgtctacgaactcattttgagtcatggt
cggactgatctgtatcttttctatgccgacttgaagaaagatcatgaaagggtggtggaa
cattgggttgatgaggaagattggctgaaagctatcgatgtgttgaaccgacaaacatct
gtcgagctgtactatcgtttcgcttccatcctcatgcgtttcagacctaaggaaactgtc
gacgcgtttattcgacaacctgtactctcccctcgtcgtctcattcccgcattattgcaa
tactcttcaccccctccccccgttgcggcggatcatacaattcgatacctcctacatttg
atacaccaacaacatctgacagataccataatttacaaccttctcatcactcggttcgct
actcatccagaccccgattcgggtcctttattacggttcctcatggcttgtccggatgat
cctttgacagaaaagccatactacgatttagactatgctttgagactttgcaagcagaat
aaccgtgtggaaccatgcgtgttgatttattccaaaatgggcttgtatgagaatagtgtc
gatcttgctttaagcaaaggtgatttggagttggcaaaaatcaatgcggataggccggag
gatgatgaggggttgagaaggaaattgtggttgaagattgcgagatatgtcgttcaagaa
cagcgggatatcaagagtgcaatgaaatttctcgaagcgaccgatttgatcaaaatcgaa
gatatccttcccttcttccctgacttttcggtaatagatgacttcaagtccgagatctgt
gctgcattggaagagtactctgcgaagattgatgcccttcgatcagagatggacgaagct
acacaaagtgcagaggctatcagaaaggacattgacggtctgtctgggcggttcgtcacc
attgacgctggagataaatgtgggaagtgtggacttggtttggtcagcagacagttttat
gtctttccatgtcaacatggtttccacgcggactgtcttatctccatggcaatggaatac
ctacctgctccaagtctacgtcgtatcttacacctccaaaacgaactcatccaatccgac
atttccaatcgtactcttctctcttcaaatttcactcccaacggttcccgtccagagaca
ccttctcgtaaaggaaaagaatccctacgttctagggagatcacttctgggtccgctgcc
accgacgctctattgggtctcacgggtcgtaatcaacttctcgctgctggtgacaaattg
agagaactcatcatacctgatgctttggctcaagccgtcagtgcgggattcacttctata
ccgggagtcggcggaaatgttgggaagaagggtaaaacgaggaaagatagggagagggaa
gaggaaaagtctgaagcggcgagaaaagagttggatgggatagttgctgctgtttgtcct
ctgtgtgaaggggcggtggttaatctagataaggggtttatcaaggagaatgaggatgct
agggattgggaagtgtga
DBGET
integrated database retrieval system
